Megalobrama amblycephala (Wuchang bream): 125270759
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Entry
125270759 CDS
T08212
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb04622
RIG-I-like receptor signaling pathway
mamb05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
125270759 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
125270759 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
mamb04054
]
125270759 (ifih1)
Enzymes [BR:
mamb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125270759 (ifih1)
Pattern recognition receptors [BR:
mamb04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
125270759 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
CARD
SNF2-rel_dom
DUF3638
Cas3-like_C_2
AAA_22
AAA_19
Motif
Other DBs
NCBI-GeneID:
125270759
NCBI-ProteinID:
XP_048050635
LinkDB
All DBs
Position
LG6:42108398..42147102
Genome browser
AA seq
986 aa
AA seq
DB search
MSSDQDVETSHILDCFRDRLKRIIVVEPLLDLLHFLEPDRKDRIRAKLRVEGDISAAATL
IDEIIKTHNYKGWSRELITALETVGCTNAVNYVLNSPPDPTEEAENDSCVRLIDLMQLSL
INMKTGDVCAHCFSQDLLTQEDHENITKATENHGNIKGARVLLKRLVKNEAGWFSKFLQA
LEDTEHHELVRELRGEPCNEDESMSVETHEFKTAEEGEQMCLAAEKEADSVNSSLLSEDL
NSSVDNSVLGVSSENEDVDMYKEGKEEEKEDLTEDDDPSASKREIVLRDYQMEVARPALE
EKNIIICLPTGSGKTRVAVYITKEHLERKKQMGQPGKVVVLVNKVPLVEQHYKAEFGRFL
KHQYSVERVSGASQLKISLPQIIEQNDIIICTAQILENSFAKAKNGDEDGIKLSQFTLMV
IDECHHTKKGDVYNHIMIRYLKQKHKNQLLKKQEKSPVPIPQILGLTASPGVGGAMSQQM
AEQHILQICANLDAFTIKTKTFEEEEAKTPYKRIARAEERKQDPFGDVIKKIMDEIHTHA
GLLPLCEPGTQNYEQWAVQKEQNAAKEENQKVRVCAEHLRHYNEALHQSNTIRMSDAFHF
LDKYHNEELKTKSSPDEEGTITITDTERFLFTLFKDKKAKLQELMGKPEYENNNLAQLKT
IILKEFSTREVARGIIFTRTRLSAIALCQWIQENPKFEEVGVSASYLIGGGDQSVVKPMT
AAEQKDVLQRFRKGEINLLIATTVAEEGLDIAECNVVIRYCLVTNEVAMIQARGRGRAED
SSYTLVAEAGSGVAERESVNEYREKMMSKAITKVCKMNRADYEKKIREFQIQAIMEEKVK
IKKKQQKGMMKESPSKISLSCRQCSVFVCSGENIEIIEKMHHVNVTEQFSKLFTVRENTS
LQERLLDYETNGVIACKNCGQQWGSMMLYKSIECPCLHIKNFVVTYGSKKKTFSKWSELP
IRFTAFDYTQHADLLVEDSEEDMDFD
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgatcaggacgtcgagacgagtcatattctggactgtttcagagacagactg
aagcggatcatcgtcgtcgagccacttctggatctgctgcatttcctcgaaccggatcga
aaggaccgaataagagccaagttgcgcgtggaaggggacataagcgccgcagcaactctg
atcgacgagattattaaaacacacaactacaaaggatggtcgagagaactgatcaccgca
ctggagactgtcgggtgcacaaacgctgtgaattatgtgttgaacagcccaccggacccc
acagaagaggccgagaatgacagctgtgtccggctgatcgatctcatgcagctgagtctg
atcaacatgaaaaccggcgatgtgtgcgcgcactgcttctcacaggacctcttaacacag
gaggaccacgagaatattacgaaagccactgagaatcatggtaacataaaaggcgctcga
gtgctcctcaaacggctggtgaaaaatgaagctggctggttttccaaattccttcaggct
ctggaggacacagaacaccatgagctggtgcgcgagctgcggggagagccgtgcaacgag
gacgagtccatgtcagtcgagacccacgagttcaaaactgctgaggagggtgaacagatg
tgtttagctgctgaaaaggaggcagactctgtgaatagctcgcttttgtcagaggaccta
aacagcagtgtggacaacagcgttctgggtgtgtcttctgaaaatgaagatgtcgacatg
tacaaagaaggcaaggaggaagagaaagaagatctcacagaggatgatgatccgtcagcg
agtaagagggaaattgttctgcgtgactatcagatggaggtggcgagaccagctctggag
gaaaagaacatcatcatctgcctcccaacaggaagtggtaaaaccagggttgctgtgtat
atcactaaagaacatttggagaggaagaagcagatgggacaaccggggaaagttgtcgtt
ctggtcaacaaggttcccctggtcgagcagcactacaaggccgagtttgggcggtttctg
aagcaccaatactcagttgagcgagtcagcggagcttcgcagctcaaaatctccttacca
caaatcatagagcaaaatgacatcatcatctgcacggcacagattctggaaaactctttc
gccaaagccaagaatggcgacgaggacgggatcaaattatcacagttcaccctgatggtt
attgatgaatgccaccacacgaagaagggtgatgtgtataaccacatcatgattcgctac
ctaaaacaaaagcataagaaccagctgctgaagaagcaggagaaaagtccagttccgatc
cctcagattctgggtctgactgcctcacctggtgtgggaggagcaatgagccagcagatg
gcagagcaacacattctccagatctgcgcaaacttggatgccttcacaataaaaacaaag
acttttgaagaagaagaggccaaaacgccatacaaaaggattgcaagagcagaagagcga
aagcaggacccgtttggagacgtgatcaagaagataatggatgaaatccacacacatgct
ggtcttctgcccctctgtgagcccggcacacagaactacgaacagtgggcggtgcagaaa
gagcagaatgctgctaaggaagagaatcagaaggtccgtgtgtgcgccgaacatctccgc
cattacaacgaggctcttcatcagagcaacaccatacgcatgtcagacgccttccacttc
ctcgacaagtatcacaacgaagagctgaagacaaaatccagccccgatgaggaaggcacc
attaccatcacggacacagagcgattcctcttcactttgttcaaagacaaaaaagcaaag
ctgcaggagttgatgggaaagccagaatatgaaaataataatctggcccaactgaaaacc
atcatcctgaaggaattcagcaccagagaggtggcgagaggcatcatattcacccggacc
cgtctcagtgccatcgctctctgccaatggattcaagaaaaccccaagtttgaggaagtg
ggagtcagtgccagctatctgatcggcggtggagatcagagcgtggtcaaaccgatgacc
gctgcagagcagaaggatgtgttgcaaaggtttcgtaaaggggagatcaatctgctgata
gccaccactgttgcagaagagggcttggacatcgccgagtgtaatgtcgtcatacgctac
tgccttgtgactaatgaggtcgccatgattcaggcccgtggacgaggacgagcggaggac
agtagttacacgctggtggcggaggcagggtctggggtggcagagagagagagcgttaac
gaatacagggagaaaatgatgagcaaagccatcaccaaagtgtgcaagatgaatcgagca
gactatgagaagaaaatcagagagtttcagatccaggccataatggaggagaaggtcaag
ataaagaagaaacagcagaagggaatgatgaaggaatcgccatccaaaatcagcctgagc
tgcaggcagtgcagtgtgttcgtgtgctctggagaaaacattgagatcatcgagaagatg
caccatgtcaatgtcaccgagcagtttagtaagttgtttacagtccgagagaatacgtca
ctacaggagcgactcttggactacgagaccaacggagtcattgcatgcaaaaactgcgga
cagcaatggggctcgatgatgctgtataaaagcattgagtgtccctgcctccatatcaag
aactttgtggtcacatatggctccaagaagaagacgttcagcaaatggagcgagctgccc
atacgtttcactgcatttgactacacccaacacgccgatctccttgtagaggactcagag
gaagacatggactttgattga
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