Megalobrama amblycephala (Wuchang bream): 125271556
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Entry
125271556 CDS
T08212
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125271556 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamb03019
]
125271556 (parn)
Enzymes [BR:
mamb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125271556 (parn)
Messenger RNA biogenesis [BR:
mamb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125271556 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
FMP23
RRM_1
PUFD
Motif
Other DBs
NCBI-GeneID:
125271556
NCBI-ProteinID:
XP_048051562
LinkDB
All DBs
Position
LG7:complement(202357..210608)
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AA seq
654 aa
AA seq
DB search
MEVTRQNFKEVLPEVCNAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKH
SMNFLLFQFGICTFRYDQAQSTYITRAFNFYIFPKPFSRTSPDIKFICQSSSIDFLASQG
FDFNKVFRSGIPYLTREEESQLREQYEERRSQMNGAGPVTYTPPSGTGVCSVPEDQRDFI
RTVEQKVDALLNGSDQTLDLEPCTGFQRKLIYQTFNSKFPKLHVETLETEKKERFIQISK
VDEEERRRREQQKQQREQEELNDAVGFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCAP
LPEELDDFKEVAMSVFPRLLDTKLMASTQPFKEVISNTSLAELHKQLREKPFKSPTTECP
EGLRSYDTSTEQLHEAGYDAFITGLCFISMANHLGSFLTPPKSHISARSKLLEPFYNKLF
LMRVIDIPYLNMSGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSAFV
SLSQTEQVQIAMNTSRYAESYRIQTYAEYLQARQKNTCSSRKWASDGWADTSYSAAAMAT
SRLHAVKRSISPSLEEQNHEADSSWTTYSGVKKIKTDGSCSQTYADVAGSEASCDWPRLQ
PEGGASVSPVQEEAEPEESSANPSQGKRSRKHKKRKSDASETTPPTLFDVPRVW
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcacgagacagaattttaaggaggttcttccagaggtgtgtaacgcggtgcag
gaggcggatttcatctcgatagacggagagttcacaggaatcagtgacgggccgtcagtc
agtgctctgaccaatggactggacacaccggaggagagatacaccaaactgaggaagcac
tccatgaacttcttgctgttccagttcggcatctgcaccttcagatacgaccaggcccag
tcgacgtacatcactagagccttcaacttctacatcttccccaagcccttcagccgcacg
tctccagacatcaagttcatctgtcagagctccagcatcgacttcctggccagccagggc
ttcgacttcaacaaggtgttccgcagcgggatcccgtacctgacgcgggaggaggagtct
cagctgagggagcagtatgaggagaggcggagtcagatgaacggggcggggccggtcacg
tacacgcccccctcgggaacgggcgtctgcagcgtgcctgaggaccagagagacttcatc
aggaccgtggagcagaaggtggacgctctcctgaacggctctgatcagactctggatctg
gagccctgcaccgggtttcagaggaagctcatctatcagacgttcaactcaaagtttcct
aaacttcacgtggagacgctggagacagagaagaaggagcgtttcatccagatcagtaag
gtggatgaagaggagaggaggaggagagagcagcagaaacagcagagagagcaggaagag
ctgaacgacgctgtgggtttctctagggttattagagccatctccaaatctgggaagctg
gtggtgggtcacaacatgctgctggacgtcatgcacaccatccatcagttctgcgcgccg
ctgcctgaggagctggacgactttaaggaggtggccatgtctgtgtttcccaggttgttg
gacaccaagctgatggcatccacgcagcccttcaaggaggtcatcagcaacacatcactg
gctgaactgcacaaacagctgagagagaaacccttcaaatctcccaccactgagtgtcct
gaaggcctccggagttacgacacgtccacagagcagcttcatgaagcaggttatgacgcc
ttcatcactggactgtgcttcatctccatggcaaaccacctggggtctttcctcactcct
ccaaagagtcacatctctgctcgctccaaactcctcgaacccttctacaacaagttattc
ctgatgagggtgattgacattccctacctgaacatgagtggacctgacctgcagcccaag
agagatcacgtcctgtacgtcaccttccctaaagagtggaagaccagtgacctgtaccag
ctcttcagcgccttcggtaacatccaggtgtcgtggatcgacgacacgtcggcgttcgtg
tctctcagtcagacggagcaggtgcagatagccatgaacaccagccgctacgccgagagc
taccgcatccagacctacgccgagtacctgcaggccaggcagaagaacacctgctccagc
aggaagtgggcctccgacggctgggcggacacttcctacagtgctgctgccatggcgacc
agccggctgcatgcagtcaagaggagcatcagtccgtctctggaggagcagaatcatgag
gctgacagcagctggacgacctacagcggcgtcaagaagatcaagactgacggaagctgc
tcacaaacatacgctgatgtcgctggttcagaggcgtcctgtgattggcccagactgcag
cctgagggcggagcctctgtgagcccagtgcaggaggaggcggagcccgaggagtcctca
gccaatccgagtcaaggtaaaaggagccgcaagcacaagaagaggaagtcagacgcttct
gaaacgacgccgccgaccctcttcgacgttcctcgggtttggtag
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