Megalobrama amblycephala (Wuchang bream): 125272505
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Entry
125272505 CDS
T08212
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125272505 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamb03019
]
125272505 (fip1l1b)
Messenger RNA biogenesis [BR:
mamb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125272505 (fip1l1b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
DUF3439
Motif
Other DBs
NCBI-GeneID:
125272505
NCBI-ProteinID:
XP_048053326
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Position
LG7:38548582..38564096
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AA seq
559 aa
AA seq
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MSAEEADKTTTTDASAGDEEEEWLYGDEGESKETEEEEAKLTAAISVTSAPPVTEEVTAT
TTTTTTTTTTTGNGVASQEEAPGEDEDSESDSDDDDDDVRVTIGDIKTGAPQYTAYGGTP
VNLNIKSAGSRAYGAGSKVKGVDLEAPGNINGVPVLEVDMESFEEKPWRKPGADLSDYFN
YGFNEDTWKAYCEKQKRLRMGLDILNIGSTTSKISVQQGRTGNSEKEITIPAHASKADFS
TPSNLYKTGINPARISPPQWAGPATQEMPYYTKTPGTIDVIGGQTATISRVEGRRRHNLE
GNNIQVISEHPSSEAEPAVAKMPPPFFPPGPLPPNIPPPPFLPPPVSQAPPLIPPPRMPI
TVPPPNFPPPTGGPPPSLIPTMDNSGHPGGYDGRPVAPYPFPTGGFPPPMQGAVSPWPGL
MDNSKQWDYYPRREKEREKERERDRQRERGHERDHSPSSVAYNSDEERYRSYRDYGDRGY
ERHRERASREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDSHRRHKHKKSKRSKE
GKEPSEEHSVDQENQEAME
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagaggaggcggataaaaccaccaccactgatgcgagtgcaggagacgaggag
gaggaatggctgtacggggatgaaggtgaaagtaaagaaactgaagaagaagaggccaaa
ctgacagcagctatcagtgtgacctctgctcctcctgttactgaggaggtcaccgcgacc
accaccaccaccactactaccaccaccactactggaaatggtgtggccagtcaggaagag
gcacctggagaagatgaagacagtgagagcgatagtgatgatgacgatgatgatgtccgt
gtcaccattggagatatcaaaacaggagcgccacagtatacggcatatgggggaactcca
gtgaacctgaacataaagtcagctggcagcagagcatatggagcaggttctaaagtgaag
ggcgtagacctcgaagctccaggcaacatcaatggtgttccagtcctggaagtggacatg
gagtcatttgaggagaaaccatggagaaagccaggtgcggacttgtctgactattttaac
tatggttttaatgaggacacgtggaaagcgtactgtgaaaagcagaagaggttacgcatg
ggccttgacattctcaacattggatccaccacaagcaagatctcagttcagcagggtcgt
acaggtaacagtgagaaggagatcacaataccagctcatgcatctaaagcagacttttcc
actccatccaacctatataaaacaggaatcaacccagcaaggatatcccctccacagtgg
gcagggcctgccactcaagaaatgccctattatacgaagacgcccgggaccattgatgtg
attggaggacagactgccaccattagcagggtggaaggacgacgtcgccacaatctggag
gggaataacatccaggtgatctcggaacatcccagctctgaggccgagcctgcagtggct
aagatgccaccacctttctttcctccaggaccattgccaccaaacatcccccctcctcca
ttcctccctcctcctgtcagtcaggctccacctctaatcccgcctccacggatgcctatc
actgttcctcctcccaatttccctcctcccacaggaggacctcctccttcactgatacct
actatggacaacagtgggcacccaggaggatatgacgggcgtcctgttgctccataccct
tttcctacaggtgggtttcctccacccatgcaaggagctgttagcccctggcccggtttg
atggacaactcaaagcagtgggactactaccctcggcgagaaaaagagagggaaaaagaa
agagaaagggacaggcagagggaacggggccatgagagagaccacagtccctcctctgtg
gcttataacagtgatgaagaacggtatcgttcttaccgtgactatggagacagagggtat
gagaggcatcgggagcgagcgagccgtgagaaggaggagcgtcacagagagaggagacac
agagagaaagaggaggggaggcacaagtcatcacggagcagtagcagacggagacatgac
agcgaggagggtgacagtcaccggcgccacaagcacaagaagtccaagaggagcaaagag
ggcaaggagcccagcgaggagcattctgttgaccaggagaaccaggaggccatggagtaa
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