Megalobrama amblycephala (Wuchang bream): 125272951
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Entry
125272951 CDS
T08212
Symbol
casc3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03013
Nucleocytoplasmic transport
mamb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125272951 (casc3)
03015 mRNA surveillance pathway
125272951 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamb03019
]
125272951 (casc3)
Messenger RNA biogenesis [BR:
mamb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125272951 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
125272951
NCBI-ProteinID:
XP_048054120
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All DBs
Position
LG1:complement(49106757..49124113)
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AA seq
762 aa
AA seq
DB search
MADRRRRRRRASQDSEEEDESASGSESGRSSSAGRKPRGKDPEPVESPAERVATKRDDES
ECESEDGVGEAVLSDYDSADLEENGSHTEGGEEEEEGEHFSDDEASRPAVEPKPAADAPT
ELGEAELGEVEERDEEVKEVKTDEKGNLAGERQSGDGQESTEDPENKSGSKGQKLDDDED
RKNPAYIPRKGLFFEHDVRGQATEEERPKGRHRKLWKDEGRWEHDKFREEEQAPKSREEL
IALYGYDIRNGTGPSDGRSYRSRKPRYSGSPSREPRRHRDGEKPVRTTWQGPPPGHRNTP
QSVTLQSGPPPAPPAAPKPSGRPSTQLPQRSFQGSRASSAPHRTEGRGHPKPSLDGPPPR
GVRPQSGEGERGPRLRGRGSHAVHADRSPAVVVEDIRSEEEEEEGEIPTATTTYTAHHYK
TERERVPSPRKQDPGPVMEGGSAAGQMRESSPPQERTVEKKSYSLVRRATRTRTSDLGKQ
ASLDDSSPAVQQTPAAAKSESWQEHSDAGTQGGLTGLDQDLARLSLAGQNWAQSPPSYLQ
AEMRGIRSSMHIAGGPPQYGNMEDMSVGGGRAKRYSSQRQRPVPEPAPMHIGVMEGHYYE
PMSFQGPIYTHGDSPAALPPQGMLVQPEMHLPHPTHPGHPGLHPHQSGGPMPNPALYAAP
PVSLSPGQPPPQQLLPPPFYPPPGVMTFGNTNYPYPAGATLPPMYPNPQAQSQVYGGVTY
YDTVQQQAQPKRSPPRRSSHPVTVRPPPPEDQSRKPAEEIRS
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgacggagacggcgcgcctctcaggacagtgaggaggaggacgag
tccgcctcgggctccgagagtgggagatcctcctcggccggccggaagcctcgcggaaaa
gatcccgagccggtcgaatcaccagcggagcgcgtcgccaccaaaagagacgatgagtcg
gagtgtgaaagtgaagatggtgttggtgaagcagtgctatcagactatgacagcgctgat
ctggaggagaatggatcacacacagagggaggagaggaagaggaggaaggagagcatttc
agtgatgacgaggcctcccgccctgctgtagaaccgaagcctgctgcagatgccccgaca
gagcttggtgaagcagagcttggtgaagtggaggagagagatgaagaggtcaaggaggtt
aaaacagatgagaaggggaatctagctggggagcgacagagtggggacggacaggagagc
acagaggaccctgaaaataaatcgggaagtaaaggccagaagctggatgatgatgaggac
aggaagaatccagcatacatcccccgaaaaggccttttctttgagcatgacgtgagaggc
caggctacagaggaggagaggcctaaaggcagacacaggaagttgtggaaggacgagggc
cgatgggaacacgacaagttccgtgaagaggagcaggcgccaaagtcccgcgaagagctt
attgctctttacggttatgacatccgcaacggcacagggccgagtgacggacggtcgtac
cgctcccgaaaacccagatattctggttcacccagtcgggagcctaggcgccaccgtgac
ggagagaagcctgtgcgtacaacatggcaggggcctccacctggccaccgcaatacccct
cagtctgttaccctacagtcaggacctcctcctgctccccctgcagcacccaaaccctct
gggcgaccctcaactcaacttccacagcgcagcttccagggcagtcgagcctcgtcggcc
ccccacaggacagaaggtcgagggcacccgaagcccagtctagacggcccgccacctcga
ggtgtgcggccacagtctggggagggtgaaaggggcccgaggctcaggggccgtggctct
catgctgttcacgctgaccgtagcccagccgtggtggtggaggacatccgcagcgaggaa
gaagaggaagagggtgagattccaacagcaacgactacatacaccgctcaccactacaag
acggagcgagaacgggttccgtcaccacgaaagcaagatccaggcccagtgatggaaggg
ggcagtgcagctggtcagatgagagaatcatctccgcctcaagagaggacggtggagaag
aaatcgtactcgcttgtgcggagggcgactagaacgcgaacgtctgatctcggtaagcag
gcgtcgttagatgactcttcgcctgccgtccagcaaaccccagcagcagcaaagagcgag
tcgtggcaagagcatagtgatgcaggaacacaaggaggactaacggggctcgaccaggac
ctggcccgcctcagtctggcagggcagaactgggcccagagcccaccctcctacctgcag
gctgagatgagaggcatccgtagttccatgcacatagcaggaggccctccacagtatgga
aacatggaggatatgagtgttggtggtggccgagctaagaggtattcatcacagcgccag
aggccagttcctgagcctgcgcccatgcacataggagtcatggagggccattattatgaa
cccatgtctttccagggaccaatctacacgcatggagacagtccagcagcgctgccccct
caaggcatgcttgttcaacctgagatgcacctgccacaccccacccaccccggtcaccca
ggcttgcatccacaccagtcaggagggccaatgcccaatccggctctttacgccgctcca
cccgtttctttgtcacctgggcaaccgcctccacagcagctgctacccccacccttctac
cctccaccaggcgtcatgacgtttggaaacaccaactacccttacccagccggagctacg
ctacctccaatgtaccccaacccccaggcacagtcacaggtctacggtggtgtgacgtac
tacgacacggtacagcagcaagctcaacccaaacgctccccgccccgacgttcctctcat
cccgttacagtcagacctccccctcctgaggaccagagcagaaagcccgctgaggaaatt
cgctcctag
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