Megalobrama amblycephala (Wuchang bream): 125273469
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Entry
125273469 CDS
T08212
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mamb04121
]
125273469 (pdzrn3b)
Enzymes [BR:
mamb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125273469 (pdzrn3b)
Ubiquitin system [BR:
mamb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
125273469 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Sina_ZnF
Prok-RING_4
zf-TRAF
zf-rbx1
U-box
TRAF3_RING
RING_XB3-XBAT31
TRAF2_zf
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
125273469
NCBI-ProteinID:
XP_048054820
LinkDB
All DBs
Position
LG8:complement(4845988..4941211)
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AA seq
1055 aa
AA seq
DB search
MGFELDRFKGAVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLDIKCDNHARGCEKIVKLQHLAEHAEMCDYSPAKCRNKGCSEVL
NLKDMDAHMRESCDYRAVGICESGCGLMLTHKEQKLDNHCCLKALKTHNGALQGKVVCLD
KELKKQALKSTKREKSLLAQLSAVHNELQMTALKYQKKFTEYSARIDSLSKSISPPCKGG
ETKSVTAILHRESGSLGFNIVGGRPCADNKDGTSNEGIFVSKIVENGPADKEGGLQIHDR
IMEVNGKDLSKATHDQAVEAFRMAKEPIMVQVLRRAPRPKPTGPTGEAQVVDISTQTDIT
FQHIMALSKLPTSSPPVDVLEQYLLPEGHSPAHEYFDPNDFLEGMQHEIEREELEYEEVD
LYRTNIQDKLGLTVCYRTDDEDETGIYVSEIDPNSIAAKDGRIQKGDRIIQINGIEIQNR
EEAVALLTSEEHPNVCLLLARPEIQLDEGWMDDDRNDYLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSHHHEKDSGVGRTDDSTRNDESSEQENLADDQTSASTTLG
SRRMLAYSQDTLGSGDLPFSSESFISADYGDADFLGDFPADECERFRELLELKCQMRSTG
SSGTPDQSLFWPVGGVGGGQGGVGEEGVDKELELLNEELRSIELECLSIVRAHRMQQLRE
QCREQSWMLHNSGFRNYNTSVDARRHELADISELPEKSDKDSSSAYNTGESCRSTPLTLE
LSPDNSLRRGNENQAEAGASSGTSGGGRILKPLLSPVQEACSPSRGRPTLLKESEIGTQP
EVRERKAGRHAQPQSPYKHAHIPAHAQHYQSYMQLIQQKSVEYAQSQMSLVSMCRDPVAS
ADLGPKMEWKVKIRSDGTRYITKRPVRDKLLKERALRIREERSGMTTDDDAISEMKMGRY
WSKEERKQHAVRAKEQRQRREFMKQSRIDCLKEQGGSAEDKKELNIIELSHKKMMKKRNK
KIFDNWMTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagttggatcgattcaaaggggctgtggacccagacttcaaatgcaacttg
tgtaataaagttttggaggacccgctcactaccccgtgcggtcacgtcttctgcgccggc
tgtgtgctgccgtgggttgttcagcagagcagctgcccggtcaaatgccaaaggatctcc
accaaagagctcaaccacgtcctccctctcaaaaacttaatattaaagttagatattaaa
tgtgacaatcacgcgcggggctgcgagaagatcgtcaaacttcagcatctggcggagcac
gcggagatgtgcgattattcccctgccaaatgtaggaataagggctgcagcgaggtgctg
aaccttaaagatatggatgctcacatgcgtgaatcgtgtgattacagagcggtcgggatc
tgcgagagtggatgcggattgatgctcactcataaggagcagaagttggacaaccactgc
tgtttgaaagccctcaaaacgcacaacggcgcgctgcaagggaaagttgtctgcttggat
aaggagctgaagaaacaagctctgaaatcgactaaaagagagaaatcacttttggctcaa
ctgtcggctgttcataacgagcttcaaatgacagcgctgaagtatcagaagaaattcact
gaatacagcgccaggattgactcgctgtccaagagtatctctccaccgtgtaagggtgga
gagaccaaaagtgtcacggctatactccatcgtgagtctggatctttaggcttcaatatc
gttggaggaaggccatgtgcggataataaagatggcacttcgaatgaaggaatctttgtg
tcgaagattgtggagaatggaccggcggataaagaagggggtttgcagatccatgacagg
ataatggaggtcaatggaaaggacttgtccaaggcgacgcacgaccaggcagtggaggcc
ttccgtatggctaaagagcccattatggtccaggtgctacgccgtgctcccaggcccaaa
cctacaggcccaactggggaagcgcaggtagtggacatcagcacccagacggacatcacc
ttccaacatatcatggccctcagcaagctgcctacgtcctccccgcctgtggatgtactt
gagcagtacctgctcccagagggacactctcctgctcatgaatacttcgaccccaatgat
ttccttgagggaatgcagcatgagatagaaagagaggagttggaatatgaggaagtggat
ttatacagaactaatatccaggataaactggggttaactgtgtgctacaggactgacgat
gaggatgagacggggatctatgtcagtgagattgatccgaacagcattgctgcaaaagat
ggacgaattcaaaagggagatcgaatcatccagatcaatggcattgagatccagaaccgt
gaggaagcagtggctcttttaaccagtgaagaacaccctaatgtgtgcctgctattggct
cgaccagagatacagctggatgaaggctggatggatgatgacagaaacgactacctggat
gacctccacatggatatgttggagcagcaacaccatcaagcgatgcagttcaccgcaagc
atgctccagcagaagaagcacgaggaagatggaggtacaacagacactgccacgctgctc
tcccaccaccatgagaaggacagtggagtgggccgcactgatgacagcactcgtaacgat
gagagttctgagcaagagaatcttgcggacgaccagaccagcgcctccaccacgctaggc
agccgtcgcatgctcgcctacagtcaggacaccctcggtagtggcgacctccccttcagc
agcgagtctttcatttccgcagactatggggatgcggacttcttgggtgactttcctgct
gacgaatgcgaacggtttcgtgaacttttggagctcaagtgccagatgcggagcacgggc
agcagtggtacaccagatcagagcttgttctggcccgttggcggtgtaggtggcggacag
ggcggcgtcggcgaggagggcgtcgacaaagagctggagcttctgaacgaggagctccgc
agcattgagcttgagtgcctgagcatagtccgagcgcaccgcatgcagcagttgcgcgag
cagtgccgcgaacagtcctggatgctgcacaacagcggcttccgcaactacaacacgagc
gtggatgcaagacgccacgagctagcggacatcagcgaactcccggaaaagtctgacaag
gacagctccagcgcgtacaacacaggagagagttgccgtagcacgccgctcactctagag
ctctcgccggacaactccttgcggcgtggaaatgaaaatcaggcggaggccggggcgagt
agcggtacatcgggcggcggcagaattcttaaacctctgctatcgcccgtccaagaggct
tgcagccccagcaggggtcgcccaaccttgttgaaagagtcagaaattggaacccagcct
gaagtccgagagcgcaaagcaggtcgccatgcccagccccagtcgccctacaaacacgcc
cacatcccagcccacgcccagcactaccagagctacatgcagctgatccagcaaaaatca
gtggagtacgcccaaagccagatgagcctagtcagcatgtgccgggaccccgtcgcttct
gccgacttgggacctaaaatggaatggaaagtgaagatccgcagcgacggcacacgctac
attaccaagcggcccgtccgggataagctcctgaaagagcgagccctacggatccgagag
gagcgcagtgggatgactacagacgatgatgccatcagtgaaatgaagatgggtcgctac
tggagcaaagaggagcgcaagcagcatgccgttcgtgccaaagagcagcgccagcgcagg
gagtttatgaagcaaagccgtattgactgtctgaaggagcaaggaggcagtgccgaagac
aagaaggagctcaacatcattgaactaagtcacaaaaagatgatgaagaaacggaacaag
aaaattttcgacaattggatgactatccaggaactgttgacccatggtacaaagtccccc
gatgggacacgagtgtacaactccctactgtcagtgaccacggtgtag
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