Megalobrama amblycephala (Wuchang bream): 125273777
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Entry
125273777 CDS
T08212
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125273777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mamb03041
]
125273777
03009 Ribosome biogenesis [BR:
mamb03009
]
125273777
Enzymes [BR:
mamb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125273777
Spliceosome [BR:
mamb03041
]
Complex A
U1 snRNP components
U1 related factors
125273777
Complex B
125273777
Ribosome biogenesis [BR:
mamb03009
]
Eukaryotic type
Pre-60S particles
Helicases
125273777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
125273777
NCBI-ProteinID:
XP_048055402
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All DBs
Position
LG1:complement(50598675..50602243)
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AA seq
519 aa
AA seq
DB search
MKFHEASFPNYVMDVITKQNWTEPTPIQAQGWPVALSGKDLVGIAQTGSGKTLSYLLPAI
VHINHQPFLEHGDGPICLVLAPTRELAQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRD
LERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKILDQIRPDR
QTLMWSATWPKEVRQLAEDFLKEYVQINVGALQLSANHNILQIVDVCNDGEKEDKLIRLL
EEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAP
ILIATDVASRGLDVEDVKFVINYDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQA
HDLVSVLREANQAINPKLIQMAEDRGGRSRGGRGGGYRDDRRDRHSSSRRDFNSYSQDNR
NGDSYGQKKVFGNKTQNGSSGYNNSSSSSSFNGGYSNNGQGNFGNQSGGYGNQGYQNQQF
GPSQGGVQNSMNHPPPFPFNPQQMPQSMQFPMAPPAFPQ
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaagttccatgaagcaagctttccaaactatgtaatggatgtgatcactaaacagaac
tggactgaaccaacccccattcaagctcaggggtggccagttgcacttagcggcaaagat
ttggtcggcattgcacagaccggctcgggaaaaaccctctcgtacttgcttcctgctatt
gttcacataaaccaccaaccattcctggagcacggagatggccccatttgcttggtgttg
gctcccacccgtgagttggcacagcaagtccagcaggtggcagcagagtacggcaaagct
tctcgtctcaagtccacctgcatctatggaggcgctcccaaaggaccacagatccgggac
ctggaaaggggggttgagatctgcattgccacacccggaaggcttattgatttcctagaa
gtcggaaaaacaaatctgcgcagatgcacgtatcttgtgctggacgaagctgacaggatg
cttgacatgggttttgaacctcagattcggaaaattttggaccaaatcagaccggaccga
cagactctaatgtggagtgctacgtggcccaaagaggtgaggcagctagccgaggacttc
ctgaaggagtatgtacagatcaacgttggtgctctgcagctcagcgccaaccacaacatc
ctacagattgttgatgtttgcaatgatggcgagaaagaggacaaactgatacgtctgctg
gaggagatcatgagcgagaaggagaacaagaccattatttttgtggagaccaaaaggagg
tgtgatgaccttactaggaggatgcgtagggatgggtggccagcaatgggtatccatgga
gacaaaagccagcaggaaagggattgggtgctcaatgaattcaaatatggaaaagcgccc
atcctcattgccacagatgtcgcctccagaggactagatgtggaggacgtcaaatttgtc
attaactatgactaccccaacaattccgaggactacattcaccgcattggccgtacggct
cgcagtcagaaaactggcacggcgtacactttctttacgcccaacaacatgaaacaggct
cacgacctcgtctctgtcctccgcgaggccaaccaagccataaaccccaagctcatccaa
atggccgaagacagaggaggtcgttcaaggggagggcgaggtggggggtatagggacgat
cgccgggatcgccactccagcagcaggcgggacttcaacagctacagccaggacaaccgt
aatggtgactcttatgggcaaaagaaggtgtttggaaacaagactcaaaatggatctagc
ggctacaacaacagcagcagcagtagtagctttaatgggggttacagcaataacggacag
ggtaactttggcaatcagtctggtggctatggaaaccaaggctatcagaaccagcagttt
ggtcccagtcaagggggcgttcaaaacagcatgaaccaccctccaccgttccccttcaac
ccccaacagatgccacagtccatgcagttccccatggcccctcctgcattccctcagtaa
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