Megalobrama amblycephala (Wuchang bream): 125274745
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Entry
125274745 CDS
T08212
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125274745 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamb03019
]
125274745 (skiv2l)
Enzymes [BR:
mamb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125274745 (skiv2l)
Messenger RNA biogenesis [BR:
mamb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125274745 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
125274745 (skiv2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
125274745
NCBI-ProteinID:
XP_048057141
LinkDB
All DBs
Position
LG9:complement(2709853..2731223)
Genome browser
AA seq
1251 aa
AA seq
DB search
MDKIDLPPIGPDDLPLSLLEMGCSGRFELITHPLPKNKPLPPHSTLPHGLPPTCLDLKTE
VEKRFLRDPAWLPVHDVDDAFHKFLKISKRQKEVDSLLHCSLSPLHSGLSVVRDPTTGML
LDFTEVLLEDTALSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLEQIKKKSEL
EEDIDFEKDLFTVPPGLKAGMDFSDKEARTMKSEVNLLSLLSTFDDVLDALPEEKEAVSQ
KEETVKLPRTNSLEDLGIKDSGNSPSQPPANTVSLTEQKKKPQEEDKGDNKKWAIPVDIT
SPCEDFYKRIPDPAFKYPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQ
KHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLNPEASCLIMTTEILRSMLYNG
SEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRI
KKRHIYVISTVKRPVPLEHHLYTGNSTKTQKELFLLLDSIGNFLTKGYYAAVEAKKERTS
KHAQSFGAKNVSQHNTTASQDRSVWQTLLNYLSQRQQTPVVAFTFSRTRCDENARSLTSL
DLTSSIEKSEIHSFLQKSLTRLRGADRQLPQILLMRDLLKRGIGVHHSGILPILKEVIEM
LFSKGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGL
DATGTVIILCKAGVHDMGDLHAMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRS
FSENHRDTQTHEKRITELRNMLSSLPPLDTEGQLSDLLSYYHTITELRITTETLQRAVLE
SVNGLKALSVGRVVIVNNSQHHNALGVILQVSNDAVNRTFTALIICEKGNEEAAGDNQSN
KVSLHIYNTALFIPEGPCSHTVQKLKLQDISALTTKTLKVIPERIIDNYNKRQQPRFRLD
PPGQAISTATQELLRLAEANPRGITTLDPVNDLHLKGVDVVEGVMRQRVLQDCLKDFHCI
HSPTFTEQFARVQERMSVQEELDKLLFLVSDQSLTLLPEYHQRIKVLEALQYVDSTGAVQ
LKGRVACQISSHELLLTELLFENTLSPLAPEESAALLSCLVFTQNTQIDPHITNTLQEGI
NQVLCVAQRIGELQRDCGIAQTAEDFVAQFKFGLTEVVYCWARGMPFAEIAELTDVQEGT
IVRCIQRLDEVLKEVRQAARIVGDSVLGSKMERASLAIRRDIVFTASLYTH
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaatagatttgcccccaattggtcctgatgatttgcccctgtctctgctggag
atgggctgctctgggagatttgagctcatcacacacccactgccaaaaaacaaacccctg
ccaccgcacagcacactccctcacgggcttcctcctacatgtctagacttaaaaacagag
gtagaaaagcgctttctgcgagatcctgcttggctccctgtacatgatgtagatgatgcc
ttccacaagttccttaagataagtaagaggcaaaaagaggtggactctctcctgcactgc
tccctttctccactgcactctggtctgtctgtggtcagagatcccaccaccggcatgctg
ctggatttcactgaggtgttattagaggacacagcattgtctgcaaaaaattccctttca
ttacaaagacagcctggacctccgtcagagagtctgagagggagtaacacaaactatcct
tttctgccaggtggaatggaagaactgacgttagagcagattaagaaaaagtcagagctg
gaagaagacattgactttgagaaagatttgtttacggttcctccagggctgaaggctggt
atggacttcagtgacaaagaagccagaaccatgaagagtgaggtgaacctgctgtcactc
ctgtcaacttttgatgatgtccttgacgctttgccagaggagaaagaggcagtgtcacaa
aaagaggagactgttaaacttcccagaactaacagcttagaggacctcggaattaaagat
tcgggcaactctccttctcagcctccagcgaacacagtaagtctgactgaacaaaagaag
aaaccacaggaagaagacaagggagataataagaagtgggccattcctgtggacatcacc
tcaccctgtgaggacttctacaaacgtatccctgatcctgcctttaagtatccctttgag
ctggacgtgtttcagaagcaggctattctccgactcgaagctcatgactctgtctttgtg
gcggcccacacctcagcgggcaagaccgtggtggctgaatacgcaattgcactttcccag
aaacacatgaccagaaccatttacacatcccccattaaggccttgtccaatcagaagttc
cgggacttcaagaacacgttcggtgacgtgggacttttgactggagatgtccagctgaat
cctgaagcctcttgtcttatcatgaccactgagattttgagatctatgctttataatggg
tccgaggtcattcgagatttggaatgggtcatttttgatgaggttcactatatcaatgat
gcagagaggggagtggtgtgggaggaagtgctcatcatgttgccagagcatgttagcatc
atcctgctgagtgccacggtgcctaacgcagtggagttcagtgaatggattgggcgtatc
aagaagcggcacatctatgttatcagcacagttaagaggcctgttcctctagagcaccat
ctctacaccggcaacagcaccaagactcagaaggagctgttcctgttgctggactccatt
ggaaacttcctcactaaaggctactatgccgcggtggaagccaagaaggaacgcacaagt
aaacatgcacaatcttttggcgcaaagaatgtatcacagcacaacacaacagccagtcag
gatcgatcagtgtggcagacgctgctgaactatctgtctcagaggcagcagactccagtg
gtggcgttcacgttctctcggacacgctgtgatgaaaacgcccgctctttgacctctctg
gacctcaccagctctatagagaagagcgagatacactcgttcctccagaagagcctgacc
aggctgagaggagccgatcggcagttgccgcagatcctgttgatgcgtgatttgctgaag
agagggattggtgttcaccacagtggcatcctgccaatcctgaaggaggttattgagatg
ctattttccaaaggtttagttaaggtgctgtttgctacagagacgtttgccatgggtgtg
aacatgcccgccagaaccgttgtgttcgacagcatccgcaaacatgacggcacaggtttc
agaaacctgctgccaggtgagtacattcagatggcaggccgtgctggcagaagaggtttg
gatgctacagggactgttatcattctctgtaaggctggagttcatgatatgggagacctc
catgccatgatgctggggaaaccaacagtgctgcagtcccagttcagactgacctacacg
atgatcctaaatctgctccgtgtggaggcccttagggttaccgacatgatgaggaggagc
ttttctgagaaccacagggatacgcagactcatgagaagagaataactgagctgagaaac
atgctctcctctctccctccgctggacacagaggggcagttatctgatttactgtcatat
taccacaccatcacagagctgcgcatcaccacagagaccctgcagcgagctgtgctggag
tcagtaaatggactcaaagctctgtctgtggggagggtggtgatagtgaacaacagccag
caccacaacgccctgggagtcattctacaggtgtccaacgatgcagtaaatcgtacattc
accgctctcattatctgtgagaagggtaatgaggaggcggcgggcgataatcagtctaat
aaagtctcacttcacatctacaacactgcactgtttattccagagggaccctgcagtcac
acagtgcagaaactgaagttgcaggacatctctgccctcacaaccaaaaccctcaaggtc
attccagagagaatcatcgacaactacaataaaagacagcagccacgcttcagacttgat
ccaccaggtcaggctatttctacagcaactcaggagctcttgcgattggctgaggccaat
ccgaggggcattacgacccttgaccctgtgaatgacctgcacctgaagggtgtggatgtg
gtggagggagtgatgaggcaacgagtgttacaggactgtctaaaagacttccactgtatc
cactcgcccaccttcactgaacagtttgcacgtgtacaggagaggatgagtgttcaggaa
gagcttgataagcttctgttcctggtgtctgatcagtcactgactctgctgcctgagtac
catcagagaatcaaggtgttggaagctctgcagtatgtggacagcactggggcggttcag
ctgaagggacgtgtggcgtgtcagatcagcagtcatgagctgttactgactgaactcctg
tttgagaacactctgagtcctctcgcccctgaggagagcgccgccctgctgtcctgcctc
gtcttcacacaaaacacccagatagacccgcacatcaccaacacactacaggagggcatc
aatcaagtactctgtgtagcacagcgtattggtgagctgcagagggattgtgggatagct
caaactgctgaagactttgtggcccagttcaagtttggcctgactgaggttgtgtattgc
tgggcaagaggcatgccgtttgctgagattgcagagctgacagatgtgcaggaggggaca
attgtgcgctgtatccagaggctggacgaggtcctgaaggaagtgagacaggctgctcgc
attgtaggtgactccgtcctgggcagcaagatggaaagagcctcactagccatacgcaga
gacattgtgttcaccgcctcgctctacacacactga
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integrated database retrieval system
