Megalobrama amblycephala (Wuchang bream): 125274753
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Entry
125274753 CDS
T08212
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03013
Nucleocytoplasmic transport
mamb03015
mRNA surveillance pathway
mamb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125274753 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
125274753 (ddx39b)
03015 mRNA surveillance pathway
125274753 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamb03019
]
125274753 (ddx39b)
03041 Spliceosome [BR:
mamb03041
]
125274753 (ddx39b)
Enzymes [BR:
mamb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125274753 (ddx39b)
Messenger RNA biogenesis [BR:
mamb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125274753 (ddx39b)
Spliceosome [BR:
mamb03041
]
Complex C
Other components
EJC/TREX
125274753 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125274753 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125274753
NCBI-ProteinID:
XP_048057153
LinkDB
All DBs
Position
LG9:2963079..2975597
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AA seq
474 aa
AA seq
DB search
MQFHMLGPSSKHSIRRMLMTSQTYRAGVVKSNGFIQHFEMTENDVENELLDYEEDEVDGG
VAGDTGLGHNDGVISIRKEGVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHE
CIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYE
RFSKYMPSVKVAVFFGGLSIKKDEEVLKRESPHVVVGTPGRILALSRNKSLNLRHIKHFI
LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE
TKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPA
IAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR
VARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNISELPEEIDISSYIEQTR
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgcagttccacatgttgggtccttcatcaaaacattcaattcgtcgcatgttgatgacg
tcgcaaacatatcgagcaggtgtagtgaaatccaacggcttcatacagcatttcgagatg
acagagaacgacgttgagaatgagctgttagactatgaggaggatgaggttgatggaggt
gttgctggggatacagggcttggacacaatgatggtgtcatatccatcagaaaagaaggg
gtcaaagggtcatatgtgtccatccactcctctggattcagggatttccttctcaaacca
gaactcctgagagctatagtggactgtggctttgagcatccatctgaggttcagcatgaa
tgcattcctcaggcgatcttggggatggatgtattatgtcaggccaagtctggaatgggg
aagacggctgtctttgtgttggccacgcttcagcagctggagccagtgaccggtcaggta
tcggtgttggtgatgtgtcatacccgagagctggcgttccagatcagcaaagagtatgag
cgcttctccaaatacatgcctagtgtcaaggtggcggtgttctttggggggttatctata
aagaaggatgaggaggtgctgaagagagagagccctcatgtggtggtgggaactcctgga
cgtattctagctctgtctcgcaacaagagtctcaacctgcgacacatcaagcacttcatc
ctggatgaatgcgacaagatgctggagcaacttgacatgcggcgtgatgtccaggaaatc
tttcgaatgacccctcacgagaagcaggtcatgatgttcagtgcgaccctgagcaaagag
atccgtccagtctgcagaaagttcatgcaagatccgatggaaatttttgtggacgatgag
accaagctgacgcttcatggcctccagcagtactacgtcaagctgaaggacaacgagaag
aacaggaagctctttgacctcttggatgtgttggagttcaaccaggtggtgatcttcgtt
aagtcggtgcagcgttgcatcgctcttgctcagttgctggtggagcaaaatttccctgcc
attgccattcacagagcaatgcctcaagatgaaagactagctcgatatcagcaatttaag
gatttccagagacggatcctggtagccacgaacctgtttggccgaggaatggacatcgaa
agagtcaacattgccttcaactacgacatgcctgaagattcagacacatacctgcacagg
gttgcaagggccggcaggtttggaacgaaaggtttggccatcacctttgtgtcagatgag
actgatgcccgcactttgaatgatgttcaggacaggtttgaggtgaacatcagcgaactt
ccagaggagattgacatctcgtcgtacattgaacaaacacgataa
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