Megalobrama amblycephala (Wuchang bream): 125275183
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Entry
125275183 CDS
T08212
Symbol
pabpc1b
Name
(RefSeq) polyadenylate-binding protein 1b
KO
K13126
polyadenylate-binding protein
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03015
mRNA surveillance pathway
mamb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125275183 (pabpc1b)
09123 Folding, sorting and degradation
03018 RNA degradation
125275183 (pabpc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamb03019
]
125275183 (pabpc1b)
03041 Spliceosome [BR:
mamb03041
]
125275183 (pabpc1b)
Messenger RNA biogenesis [BR:
mamb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125275183 (pabpc1b)
mRNA cycle factors
Stress granule specific factors
125275183 (pabpc1b)
Spliceosome [BR:
mamb03041
]
Complex C
Other components
Complex C specific factors
125275183 (pabpc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RBD_DEAH11
RRM_10
RRM_7
RBD_RDR6
RRM_occluded
RRM_3
HTH_58
Motif
Other DBs
NCBI-GeneID:
125275183
NCBI-ProteinID:
XP_048057858
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All DBs
Position
LG9:complement(17249950..17260451)
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AA seq
634 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFER
HEDAQRAVDEMNGKELNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYPTSQLAQLRPSPRWTTQGVRPQHFQNMPGTMRPSAPRPQTFSTMRPASQVPRMMSTQ
RVAAQTMGPRPSTAAAAASAPPVRGVPQYKYAPSVRNPQQHMNTPPQVTMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKTVTNSAGVPSV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgctcctagttaccccatggcctcgctgtatgttggggacctgcaccag
gacgtgactgaagccatgctctacgagaagttcagcccggccggtgccatcctctccatc
cgcgtgtgcagggacatgatcacccgcaggtcgctcggctatgcctatgtcaacttccag
cagcctgcagatgctgaacgggctttagacacaatgaactttgacgtcatcaagggtaga
cctgtccgcatcatgtggtctcagcgtgacccctctctgaggaaaagtggtgttggaaac
atctttattaaaaacttggataagtctattgataacaaagccctttatgacactttctct
gcttttggcaacatcctgtcatgcaaggtggtttgtgatgagaatggctcaaagggctac
ggctttgtgcactttgagacccaggaggctgctgaaagagccattgagaaaatgaacggc
atgttgctgaatgacagaaaagtgtttgtagggcgcttcaaatctcgcaaggagagggag
gctgagcttggtgcaagagccaaagaatttactaatgtgtacataaaaaactttggagaa
gatatggatgatgacaagctcaaggacatcttcagcaaatatggtaatgctatgagcatc
cgtgtcatgactgatgaaaatgggaagtccagaggctttggatttgtgagttttgaaagg
cacgaagacgcgcaaagggctgtggatgagatgaatggcaaagaactgaacgggaagctc
atctatgtgggtcgtgctcagaaaaaagtggagcgccaaactgagctcaagcgcaaattt
gaacagatgaagcaggaccgcatgactcgctaccagggtgtcaatctctatgttaagaac
ttggatgatggtattgatgatgagcgtcttcgtaaagagttctctccctttggaacaatc
accagtgccaaggtcatgatggacggtggtcgcagtaaaggcttcggttttgtttgtttc
tcttcccctgaggaagccactaaagcagtgactgagatgaatggccgtattgtggctact
aagccactgtatgtggctcttgctcagcgcaaagaggaacggcaggcccatctcaccaac
cagtacatgcagaggatggccagtgtccgtgcagtgccaaacccagttatcaacccctac
caacctgcacctccatcaggatacttcatggctgccattccgcaggcccagaacagagct
gcatattaccctacaagtcagctcgcccaactcagacctagtccccgttggaccacacaa
ggcgtccggcctcagcacttccaaaacatgccaggcacaatgcgcccatctgcccctaga
cctcagaccttcagcaccatgcgtcctgcatcacaggtgccccgcatgatgtccactcag
cgtgttgctgctcagactatgggtccacggccctccactgcagcggctgcagcttctgct
cctccagtacgcggcgtgcctcagtacaaatacgcacccagtgtccgcaaccctcagcag
cacatgaacacaccgcctcaggttaccatgcagcagcctgctgtgcatgtgcaaggacag
gaaccactgacggcctccatgctcgccgctgctcctccacaggaacagaagcagatgctg
ggtgagcgtctcttcccacttatccagaatatgcatcccagcctggctggcaagatcact
ggtatgctgctggaaatcgacaactctgagctcctccacatgctggagtctccggagtct
ctgcgctccaaggttgacgaggcggtggccgtgctccaggctcaccaggctaaagaagct
gctcaaaaaactgtgaccaactctgctggtgtgccaagtgtttaa
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