Megalobrama amblycephala (Wuchang bream): 125275375
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Entry
125275375 CDS
T08212
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125275375 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mamb03021
]
125275375 (smarcc1b)
03036 Chromosome and associated proteins [BR:
mamb03036
]
125275375 (smarcc1b)
Transcription machinery [BR:
mamb03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125275375 (smarcc1b)
Chromosome and associated proteins [BR:
mamb03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125275375 (smarcc1b)
PBAF complex
125275375 (smarcc1b)
GBAF(ncBAF) complex
125275375 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_1
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
DUF919
Motif
Other DBs
NCBI-GeneID:
125275375
NCBI-ProteinID:
XP_048058192
LinkDB
All DBs
Position
LG9:complement(24011926..24033402)
Genome browser
AA seq
972 aa
AA seq
DB search
MATQSIGSAAAGPTTSQAGCSSSLSRRMDGGPCCKFWENPEIISQMETVRSWIGKHYKKY
VQTDAPSSKSLSGLVIQLLQFQEDTFGRRANNPSFTKLPVKCFQDLRPGSALCHILGSVY
KFKTEQGWRRFDLQNPSRVDRNVEMFVCVEKTLIQNDLLSRPVVYLSPDLEQKQALKLKD
IVVRHQGTVTEERSQATHQVYPSSSTSDEEDWLRPVMRLDRHVMVHWGMCPDSYDSLISA
NDIDGEVEEPPNPDRCWKVHARWILDTDTYNEWMNEEDYEIDENGNSMSFRRRIYQSTEE
QKPGKKRRRSPSPPSSESKKKGGKKSSGMYKRRGQPEEAEPEEDLTKDMEDPTPVPNMEE
VILPKNVNLKKDSENTPVKGGIMADLDDQEEDLLSGVRDEEEQREYGRGMEGEESATEQT
HHIIVPTYASWFDYNCIHQIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYL
TSTSCRRNLTGDVCALIRVHSFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLTDTPSGL
VPLQHRPLQVSASQHMLHFPEKSTEKPSDLQNFGLRTDIYAKKHPKSKGANAGREWTEQE
TLLLLEALEMYKDDWNKVSEHVGSRTQDDCILHFLRLPIEDPYLENSEASMGPLAYQPVP
FSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRAREEAPPELFNASFHKAQRVRHN
LDPAFTLQTGGIAGLDADHSEKPDGSGIEPMNTEYDQHEKLEGDSILGEGERVKNEEKEE
SEGERGEESTAEESFDMALTQGEGEEMKRRVELDLVEGNIATAAAAALASAATKAKHLAA
VEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQNFHLEQ
VKYAELKARQNVEPQQQSGTAQSSSTAYNPLHHGRSVGSAGAGQMMGARQPGAPNGMYQT
PPSSQSDGAAPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggccacacaatccataggatctgctgctgcgggacctacgacaagtcaagctggttgc
agctcttcattgagccgaagaatggacggtggaccgtgctgtaaattctgggagaacccg
gaaataatctctcagatggaaacagtgcgcagttggattgggaagcattataaaaagtat
gtgcagactgatgctccctccagcaagtccctgtctgggctggtcatccaactgctgcaa
tttcaggaagacacttttggtcggcgagcaaataacccaagctttacaaaactcccagta
aaatgttttcaggacctgaggccaggaagtgctctctgtcatattctgggatcagtgtac
aagtttaagacagaacagggatggagacgctttgaccttcagaatccatccagagtggat
cgcaatgtagagatgttcgtctgtgtggagaaaactctgatacagaatgacttattaagc
agacctgtggtgtacctgtcccctgatcttgaacagaagcaagcacttaaactcaaagac
attgttgtgcgacaccagggcacagtgaccgaggagaggtcacaagccacccaccaggtg
tacccgtcatcctccacatcagatgaagaagactggcttcgaccagtcatgcgattggat
cggcatgtgatggtacactggggaatgtgtccagacagttatgactcacttatatcagca
aatgatatagatggagaagtggaggaacctcccaacccagacaggtgctggaaggttcat
gccagatggattcttgacacagacacatataatgagtggatgaatgaggaggactatgag
attgacgagaatgggaatagtatgagtttccgcaggcgtatctaccaaagcacagaggaa
cagaaacctgggaagaagaggcgtcgctccccctctccaccatcctctgagtctaagaag
aaggggggaaagaaaagctcagggatgtataagaggcgtggccaaccagaagaggcggag
ccagaggaggacctcactaaagacatggaggatcccacaccagtgcctaacatggaggag
gtcattctgcctaaaaatgtgaacctaaaaaaagacagtgaaaacactccagtcaaagga
ggcattatggctgatttagatgaccaggaagaggacctgctctctggtgtcagagatgag
gaagagcagagggagtacggccgtgggatggagggggaggagagtgccacagagcaaacg
catcacatcattgtgcccacctatgcctcatggtttgactacaattgtattcatcagata
gagaggcgagctctgcccgagttcttcaatgggaaaaataagtccaaaacaccagaaata
tatcttgcataccgcaacttcatgattgacacataccggctaaatcctcaggagtatctg
acctcaacctcctgcagacgaaacctgacaggagatgtgtgtgcacttataagggttcat
tcgtttttggagcagtgggggttgataaattatcaagtagatgcagaaagtcgacccctc
cccatgggcccacccccaacaccacactttaacgttcttacagacacaccgtccggactt
gtcccactacaacacagacccttacaggtttcagcctctcagcatatgttgcatttccca
gagaaatcgacagaaaaaccatctgacctgcagaattttggtctacggactgacatttat
gctaagaaacatccaaagagtaaaggcgcaaatgcagggagagaatggacagaacaggaa
acactcttgcttttggaggctttggagatgtataaagatgactggaataaggtgtcagag
cacgtgggtagccgcacacaggatgactgtattcttcacttcttgcggttgcccatagag
gacccgtacctagagaactctgaagcctcaatgggtcctctggcctatcaacctgtcccc
ttcagccagtcagggaaccctgtaatgagcactgttgctttccttgcatctgtggtcgac
cctcgagtggcctccgcagctgccaaagcagctttagaggagttctcgagagcaagagaa
gaggccccgccagagttattcaatgccagctttcacaaggcacaaagagttaggcataat
ttagatccagcctttacgctccaaacaggcggcattgcaggacttgatgctgaccattca
gaaaagcctgatgggagtggcatagaaccaatgaacactgaatatgatcagcatgaaaag
cttgagggtgacagcatcttgggagagggagagcgtgtgaagaatgaggagaaagaggag
agtgaaggagagagaggagaggagagcacagcagaggagagttttgacatggccctcacc
caaggggagggggaggagatgaagaggagggtggagcttgatctggtggagggaaatatc
gcaacagctgctgctgcagcactggcctctgcagctaccaaagcaaagcacttggcagca
gtagaagagaggaagatcaaatctcttgtggctctgctggttgagactcagatgaaaaag
ttggagatcaaactgagacactttgaagagctagagaccattatggatcgagaaaaagag
gctctggagcagcagagacaacagttactgtctgagaggcagaacttccacctggagcag
gtgaaatatgccgagctgaaggcacgacagaacgtggaaccgcagcagcaatcaggaacc
gcacagagcagcagtactgcatacaatcctcttcaccacggtcgttcggtgggcagtgct
ggtgctggacagatgatgggtgctcggcagcctggagctcccaatggcatgtaccaaact
ccaccgtcctcacagtctgatggggctgcccccatgtaa
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integrated database retrieval system
