Megalobrama amblycephala (Wuchang bream): 125275637
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Entry
125275637 CDS
T08212
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
mamb01001
]
125275637 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
mamb04054
]
125275637 (ciita)
Enzymes [BR:
mamb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
125275637 (ciita)
Protein kinases [BR:
mamb01001
]
Serine/threonine kinases: Other
TAF1 family
125275637 (ciita)
Pattern recognition receptors [BR:
mamb04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
125275637 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
AAA_25
NB-ARC
nSTAND3
Pox_A32
TsaE
AAA_24
ABC_tran
Motif
Other DBs
NCBI-GeneID:
125275637
NCBI-ProteinID:
XP_048058709
LinkDB
All DBs
Position
LG1:complement(55791976..55816898)
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AA seq
1166 aa
AA seq
DB search
MRVSVSCCPVMVPFEYVLLQVRKALQVSPGLLHDLLSELHEANVFSTQYYQSLYKDGELE
EQLLFEVVCNDGEDLARRLALPLWQNWDISQSILDSTLKKQEELVPSDAELQDIVSDPMS
ELLPDNVLSKYIESILEETEEAIDPNFLDNLSFIIDTDTTCTQPDQVIGQDNLTNKRSRK
RKVDAPSNKTHKDTDGKPLYKRNKKATTCSESPSSEKTPTITSQGSFQLSSNTFQNILRI
PFSPPPLPSSGGSALQFSICPFTPPLIGTVVPTWPTYVLVSPQHVSPGTQILPLSPADGT
VAPPELTVSVLPVGSSSDRACKSLPSVSVDTLSPTKEGNPQKNTDSPPSKTESKIRPEAP
ECVKEYIHHIKSRMRDVCCTMRGGLAMESHYVDVDVTQRKLLIKSGKNANKCLEKELVVL
SDSERKKAKLDRSQLFHNGDSKPKQSVALLGKAGVGKTTFIQRLCLDWASGSLPQFQFVF
LLNCKILDFTQSNYSLKGLLLDLSMSPRCEDSDSVFNHILSCPDEVLIIFDSFDHIKDFE
GLLQCPAKSPTNTKYTIKQLFSGLFQKEILSGCTILIATRPKDVLNQVLRKIDSLLELCG
FSPEDIELYTSKYFEDASLKESALKKIKNQSYIFSLCSNPLLCWTTCYLLENQDSRSDDL
PSTLTDLYQRVTSKYLQQATLGNRSLCKRKQPDIPQLCKMAWEGFKNHNTCVNSASSTEL
LDCGLKSGILVSYETSERQENHFADLFTQNLLSALHLVQSKQVNEKMVVANSIVQQKKRK
VQGESQDLLQRFVTGLIFQKTPDRVSILDSSVNIKAKRKAVEAHLKSMKPNNLVPARLLE
LFHCVYETNGDKFAKLLLKSLPDNLSFCGAQLCPSDVYVICHLLQHAGAMKRTFSINLQD
TCIPISGLKELVGLKCIKSFWAHTADTIGLWEDLHQSNDELNLKKAIEKFTLNPFKATQG
YHIESLPDLVRIHREKKLPMSEFVSALDKGVPALLHLQRLEFELGVQNGPEVFPKLIEVL
PSLHSLQHLDIEKNQIGDSGAEKLSGVLNFLKCLKLLNLSQNFIGDAGVEKLAKALPSIP
SLQTLSLYGNAIADSGAEHLALVLPEMKVLQDLDVKFNKFTDIGATKLSAALKKCTGMKS
LELWNDCIPYGVFEHLRLQDSRIRSL
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagagtatctgtcagctgctgtccagtcatggttccctttgagtatgtgttgttacag
gtgagaaaagctttacaggttagccctggattactacacgatcttctcagtgagctgcac
gaggccaacgtcttctctacccagtattaccagtctctctataaggatggtgaactcgaa
gagcagctcttgtttgaagtcgtctgtaatgatggagaagatttggcgagaaggctcgct
ttaccgctctggcaaaactgggacatcagccaaagcatcctggattcaacactcaaaaaa
caggaggaattggtcccttctgatgctgaattgcaagatattgtctcagacccaatgtct
gaactcttacctgacaatgtcctctcaaaatatattgagtccattctggaagaaaccgaa
gaagctattgatcccaacttccttgataacctcagttttataattgacacagacacaact
tgcacacaacctgaccaagtaataggccaagacaatttgacaaacaaaaggtcaagaaag
cgaaaagttgatgcaccttcaaacaaaacccacaaagatactgatggcaaacccttgtac
aaacgcaacaaaaaagcaacaacgtgctcagaaagcccctcaagtgagaagacgcccacc
attacatcccagggaagtttccagttgagctcaaacacattccaaaatattttacgtatt
ccattcagtccccctcctctgccctctagtggtggttcagcactacagttcagcatctgc
ccttttacgccgcctctgatcggcactgtggttccgacatggcccacgtatgtgcttgtg
tcgccccaacatgtgagtccaggcactcagatacttcctctttcacctgctgatggcaca
gttgccccaccggagctcacggtttcagtactcccagtcggctcatcctcagaccgtgca
tgcaagagtttaccatcagtatctgtagacacgctctcccctacaaaagaaggaaaccca
caaaagaacactgattccccaccttccaaaaccgaaagtaaaatccgcccagaagcacca
gaatgtgttaaagaatacatacatcacataaagtcccgcatgagagatgtctgctgcact
atgcgtgggggactggcaatggaatcacattatgtggatgtggatgtgacccagaggaaa
ctacttatcaaatctggcaagaatgcaaacaagtgtctggagaaggaactggtagtcctc
agtgattcagagcgaaagaaagcaaagctggacagaagtcagttatttcataacggtgat
tcaaaaccaaaacagtctgtcgctcttctcggaaaagccggagtgggaaaaaccacattc
attcagcgtttatgtttggactgggcgagcggcagcctgcctcaatttcagtttgttttt
ttgctgaactgtaaaattttagacttcacacaatctaactacagcttgaaaggtttactg
ttggatttgtctatgtctcctcgctgtgaggactcagactctgtgttcaatcacattctg
tcctgtcctgatgaagttctcattatctttgacagctttgatcacataaaagactttgaa
gggcttcttcagtgccctgctaaatcacccaccaacactaaatacaccatcaaacagcta
ttttcgggtttgttccaaaaggaaatcctctcggggtgcacaattctcatcgccacaagg
cctaaagacgttttaaatcaggtgctgcgaaaaatcgacagccttttggagctatgtggc
ttctctcctgaagacattgagttgtacacatcaaaatattttgaggatgcttccctcaaa
gagagtgcactaaaaaagattaagaatcaaagctacatattcagtttatgctcgaacccg
ttactttgttggactacctgctacctgcttgagaaccaagacagccgcagtgatgatttg
ccttcaaccctcacagacttgtaccaaagagtgacctccaagtatctgcaacaggctacg
cttggaaaccgctcattatgtaagaggaaacagccagacatcccacaattgtgcaaaatg
gcatgggagggattcaagaatcacaatacatgtgtaaactctgccagttcaacagagctg
ctagactgcggccttaaaagtggcatacttgtatcctacgaaacatctgagcgacaagaa
aaccactttgcagacctcttcactcagaacctcctgagtgctttgcacttggtgcaatcc
aaacaggtgaatgaaaaaatggtggtggcaaacagcatagtccagcagaagaaacgaaag
gttcagggagagtcgcaggacttgctgcagaggttcgtcacgggattgatcttccagaag
acacctgatagagtcagcatcctggacagcagtgtcaacataaaggccaaaagaaaggct
gttgaagcccatctgaagagcatgaagcctaataatttggttcctgccaggttattagaa
ctgtttcattgtgtttatgagaccaacggagacaaatttgccaaactgctgttaaaaagc
ctgcctgacaatctgtcgttctgtggggcacagctttgcccttcagacgtgtacgtcata
tgccatctccttcaacatgccggcgcaatgaagcggaccttctccattaacctgcaagat
acatgtattcccatcagtggcctgaaagagcttgtgggactcaaatgtataaagtcattc
tgggcacatacagcagacaccattggcttatgggaggacttgcaccaaagcaatgatgaa
ttgaatctgaaaaaagccatcgagaaattcaccttgaacccattcaaggcaacacaaggt
tatcacatagagagcctacctgaccttgtccgaattcacagagagaagaagttaccaatg
agtgaatttgtgtctgcgctggataaaggtgtgccagccctcctgcatcttcagagacta
gaatttgagcttggagttcagaacggtccagaagttttccctaaactgatagaggttctg
ccttctctgcattctctccaacatctggatattgagaaaaaccaaataggagactctgga
gctgagaagctatcaggcgttttaaattttttgaaatgtctgaaattgctaaatctgtct
caaaacttcattggagatgccggggtggagaaactggctaaagctctgccatccatccct
tctctacagaccctcagtctctatggaaatgcgattgctgacagtggagcggaacacctg
gctttggttttaccagaaatgaaagtcctgcaggacttggatgtcaagttcaacaagttc
acagacatcggagctacaaagctcagtgctgctctgaaaaagtgcactggaatgaagtct
ttggagctgtggaatgactgcattccatatggagtttttgaacaccttcgtcttcaagat
tcacgaataagatcactttga
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