Megalobrama amblycephala (Wuchang bream): 125276052
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Entry
125276052 CDS
T08212
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
mamb00535
]
125276052
Proteoglycans [BR:
mamb00535
]
Extracellular matrix (ECM) proteoglycans
Others
125276052
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
DUF4959
NDNF
VWA_3
Big_5
Motif
Other DBs
NCBI-GeneID:
125276052
NCBI-ProteinID:
XP_048059427
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All DBs
Position
LG9:complement(43868127..43901031)
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AA seq
1861 aa
AA seq
DB search
MRVRALLILILASVLIAHAQVPMPRRLRFRELSSDTLGVSWKEPKGAFDGYRLAYSTDSG
DERELTVSKSEPKAVIAGFDRRKEYSVKVTAVRGTERSKALLGRYSGSESGSEVSDVGVP
LNQQDSVVSVPGDEIAEEDVFTCKTPAIADIVILVDGSWSIGRINFRLVRMFLESLVRAF
AVGSEYTRVGLAQYSGDPRIEWHLNAHSTKEAVIEAVKNLPYKGGNTLTGLALTYILENS
FKPESGSRPDVPKIGILITDGKSQDDVLAPAQRLRDAGIELFAIGVKNADENELRAIASP
PEETHMYNVADFSVMSSIVEGVTRSVCERVAELSKEISGETEPYSRSLDAPSDLVTSEVT
ARSFRVSWTHAAGPVEKYRVVYYSSSGSRPEEVVVNGGENSVVLRHLNSLTEYQITVFAI
YSNSASEALRGSETTLALPTVSSLELYDITHSTMRVRWREAEGASGYMILYAPLTEGDPA
DEKEVKVSDTVTQIELEGLTPATEYTVTVYAMYGEEASDPMTAQETTLRLTPARNLRISD
VNHSSAKLSWDAASRKVKGYRIVYVKTDAVQTNQVEVGPVTTVMLRNLSSVTEYTVAIFA
LYEEGQAEPLTDTFTTSVVPLPLNLRSSDVSTDSFRVMWQHAAPDVSFYRLTWRPAAGGE
TKEVLINDNSNTFVITGLKPLTEYEVSLSGVYRDESESDPVEIFETTVARTTTVSTTTVR
TTTAVQRLAVRNLQLSDVTTFSMRVSWDALGPNVRQYRVSYISTRGDRAEQVSMVPAGQT
SVLLQPLLSDTEYRISVSAVYGDGDGPSITRVARTLPLSAPSGLRVSEEWYNRFRISWDA
PPSPTMGYRIVYQPTSAAGRALETFVGDDVTTMLIVNLLSGTEYSVKVIATYTTGSSEAL
SGRAKTLYLGVSNLNTYQVRTTSMCVQWQPHRHANLYRLILQSQLNGEKQEVRLAGSASR
HCFNDLTPNTQYTISVHAQLQDTEGPAVTTTQRTFPVSTSPPTTTSSTAPPPTLPATKEV
CRAAKADLVFLVDGSWSIGDDNFQKIIRFLYSTAGALDRIGPDGTQVAIAQFSDDARTEF
KLSSHDNKESLLDAIQRISYKGGNTKTGRAMQHVKDSVLTAVGGARRGVPKVLVVLTDGR
SQDDVLQVSQEIQAEGYVVFAIGFADADYGELVSIASKPSERHVFFVDDLDAFRKIEEKL
ITFVCEAASATCPSVPMSGSTLPGFRMMEMFGLVEHLYSSVSGVSMEPGTFNSYSSYRLG
SDALLTQPTRFIHPEGLPSDYTITMLFRLLPETPQEPFALWEILNNNNEPLVGVILDIAG
KTLTFFNTDYKGDFQTVTFEGMEIQKLFYGSFHKLHIAVSKTSALVMVDCKSAGEKPVNA
AKNISTDGVEVLGRMVRSRGSKDNSAPFQLQSFDIVCSTSWARRDKCCELPSLRKEADCP
SLPRACTCTQDSKGPPGPAGPPGGPGIRGARGDRGEPGPVGPVGPVGDAGVPGAQGPPGP
PGPSGRSIRGPTGAPGETGQKGDAGPPGLQGVPGSPGSPGREGPAGARGLPGPDGPQGRV
GAPGTIGGPGAPGAPGENGPAGPRGEQGPPGLPGPKGDKGERGDVQSTSSVQAIARQVCE
QLIQSHMARYSSILNHIPSQPVSIRTVPGPPGEPGRQGSPGPQGEQGPPGRPGFPGSNGE
NGQPGARGPPGEKGEKGNPGVGVQGPRGAAGPPGPPGEGRTGSPGPSGRPGNPGSPGRSG
IPGPVGPPGPAGYCDQNACLGYNVGEPGFDGDLTDGDVPAVQLPSSSYQPYGPEAEAEED
DPYGSYGSYYQPNYPPPRPVQPDDPVIASEVEELRSPGIQRQTRSLADLRRRQPRRAAQR
T
NT seq
5586 nt
NT seq
+upstream
nt +downstream
nt
atgcgggttcgagcgctgctgatcctgatcctcgcatcagttctcatcgcgcatgcgcaa
gtgccgatgccccggaggctgcgtttcagagagctgagctccgacacgctcggcgtgagc
tggaaggagccgaagggagcgttcgacggctatagactcgcgtacagcactgactcagga
gacgagcgtgagctgacagtgagtaaatctgagcccaaagccgtcatcgcagggttcgac
cgcaggaaagagtacagcgtgaaggtcacggccgtcagagggacggagcggagcaaagca
ctgctgggcagatacagcggatcagagtcaggctcggaggtgagtgacgtcggcgtgccg
ctcaaccagcaggacagcgtcgtctctgtgccgggcgacgagatcgctgaagaggacgtc
ttcacatgtaaaactccagccatcgccgatatcgtgattctggtggacggatcgtggagt
atcggccggattaatttccgtttggtgcggatgtttctggaaagcctcgtcagggccttc
gcggtcggttctgaatacacacgtgttgggctagcgcagtacagcggggatccgcggatc
gagtggcatctgaacgctcacagcactaaagaggccgtgatcgaagccgtgaagaacctg
ccttataaaggaggaaacacactcacaggtcttgctttgacgtatattttggagaacagc
tttaaacctgaatctggatccagacctgacgttcctaaaattgggattctgatcacggat
gggaaatcacaggacgatgttcttgctcctgctcagagactcagagacgctgggatcgag
ctgtttgctatcggggtgaagaacgcggatgagaacgagctgagagccatcgcctcgccg
ccggaggagacgcacatgtataacgtggctgatttcagcgtgatgagctccatcgtggag
ggcgtgacccgcagcgtctgcgagcgcgtcgctgaactcagcaaagagatcagcggtgag
acagagccgtattcaaggtcacttgacgctcccagcgaccttgtgacctctgaggtcacg
gccaggagcttccgtgtgtcgtggactcatgctgctgggccggtggagaagtacagagtg
gtgtattattcatccagtggatccagacccgaggaggtggtggtgaacggtggcgagaac
tctgtggtgttgaggcatctgaactctctgactgagtatcagatcactgtgttcgccatt
tacagcaactcagccagtgaagctctgagaggcagcgagaccaccttggcgctgccgacg
gtcagcagtctggagctgtatgacatcactcacagtaccatgcgtgtgcgctggcgagag
gcagaaggggcttctgggtacatgatcctgtacgcgcctctgacggagggcgaccccgcg
gatgagaaagaggttaaagtgtctgacactgtgactcagattgagctggagggtttaact
cctgctaccgaatacacggttactgtttacgccatgtacggagaggaagccagtgacccc
atgaccgcgcaggagaccacgcttcgtctgactcctgctcgtaatctgcgcatctcagac
gtgaatcacagctccgctaaactgtcgtgggacgcggcatctcgcaaggtcaaaggttac
cgtatcgtttatgtgaagacagacgctgtgcagaccaatcaggtggaagtgggaccggta
accacggtgatgctgcgcaacctgagctctgtgacggagtacaccgtcgccatctttgcc
ctctatgaggaaggacaagcagaaccgctgaccgacactttcaccaccagtgtggttcct
ctgccgctgaatctccgctccagtgacgtctccactgacagtttcagagtcatgtggcaa
cacgccgcgcctgacgtctccttctacagactcacctggagacccgcagcaggaggagag
actaaagaggttctcatcaacgataactccaacacgtttgtcatcacgggtctcaagcct
ttgactgaatatgaagtttctctgtctggagtctacagagatgaatctgagagcgatcca
gtggagatctttgaaaccacagttgccagaacaacaacagtttctacaacgaccgtcaga
acgactacagccgtgcagcggctggccgtcaggaatctgcagctgagtgacgtgacgacc
ttcagcatgcgtgtgtcatgggatgctctgggtccaaacgtgcgtcagtaccgagtgtct
tacatcagcactcgaggtgaccgcgccgaacaggtgtcgatggttcctgcgggtcagacc
tcggtgctgctgcagcctctcctgtcggacactgagtaccgcatcagcgtctcggccgtc
tacggcgacggcgacggaccgtccatcacgcgagtcgctcgcacactgcctctctccgct
cccagcggcctccgcgtgtccgaggaatggtacaaccgcttccgcatcagctgggacgcg
ccaccctcgcccaccatgggctacaggatcgtctaccagcccacctcagcggccggccgc
gctctggagacgtttgtgggcgacgacgtgaccaccatgctgatcgtcaatctgttgagc
gggacggagtacagcgttaaagtcatcgccacctacaccacgggatccagcgaagccctg
agcggacgcgcaaagacgctgtatctgggagtgagtaacctcaacacgtatcaggtgcgg
acgaccagcatgtgtgtgcagtggcagccgcatcgacacgccaacctgtaccgcctcatc
ctgcagtcacagctcaacggtgagaaacaggaagtgaggttggctggctccgcctccaga
cactgcttcaatgatctcacgccgaacacgcagtacacgataagtgttcacgctcagctg
caggacacggagggaccggcggtcaccaccacgcagaggacatttcctgtgagcacgtct
ccgcccaccacaaccagcagcaccgcccctccgcccacccttcccgccactaaagaagtg
tgtcgcgctgctaaagcagatctggtgtttctggtggacggatcatggagtatcggagat
gacaacttccagaagatcatccgcttcctgtacagcacagccggagctctagaccggatc
gggccggacgggactcaagtggccatcgctcagttcagtgatgacgctcgcaccgagttc
aagctcagctcccacgataataaagagagcctgctggacgccattcagaggatctcatat
aaaggaggaaacacaaagacaggcagagccatgcagcatgtcaaagactccgtgttgacg
gcggtgggcggagccagaaggggcgtgcctaaagtcctggtggtgctgacggacggccgt
tcccaagacgacgtcctccaggtttcccaggagatccaggcagaaggttatgtcgtgttt
gccatcggttttgccgatgctgattatggcgagctggtgagtatcgccagcaaacccagc
gagagacacgtgttcttcgtggacgatctggacgctttcagaaaaatcgaagagaaactg
atcaccttcgtttgtgaagctgcttcagcaacgtgtccatcagttcccatgagcggcagc
actttaccagggttcaggatgatggagatgttcgggctggtggagcatctgtacagcagc
gtgagcggcgtgtcgatggagccggggaccttcaacagctacagcagctacagactcggc
agcgacgcgctcctgacgcagcccaccaggttcatccatccggagggtctgccgtcagac
tacaccatcaccatgctgttccggctgcttccggaaaccccacaggagccctttgcattg
tgggaaatcctcaacaacaacaacgagccattagtgggagtcattctggacattgcagga
aagactctgacttttttcaacaccgattataagggcgattttcagacggtgacatttgag
gggatggaaatccagaaactcttctatggcagtttccacaagctgcacatcgcagtgagt
aagacctcggctctggtgatggtcgactgtaaatcggcaggagagaagcctgttaacgca
gccaaaaacatcagcactgacggggtggaggttctcggccggatggttcgatccagaggc
tccaaagacaactctgctccgtttcagctgcagtcctttgatatcgtgtgcagcacatca
tgggctcgacgggacaaatgctgtgagctgcccagcctgaggaaggaagctgactgtccg
tctctcccacgcgcctgtacctgcactcaggacagtaagggccctcctggccccgccgga
cctcctggaggtcctggtatcagaggagccagaggagatcgaggtgaacccggccctgtg
ggtcctgttggtccagtaggggacgctggagttccaggagctcaggggcctcccggccct
ccggggcccagcggacgctccatcagaggccctacgggcgctccgggtgagacgggacag
aagggagacgcgggtcctccagggctgcagggtgttcccggctcgcctggctctccggga
cgtgaggggcctgcaggagcccggggtctgccaggtccagacggtcctcagggacgagtg
ggagctccggggactataggaggtccaggagcccctggggccccgggagaaaatggccct
gcaggacctagaggagaacagggtcctccgggactcccgggacctaaaggagacaagggc
gagaggggtgatgtccagtccacgtcttctgtacaagccatagcgagacaagtgtgtgag
cagctgatccagagtcacatggcacgctacagttccattctgaaccacattcccagccag
ccggtgtcgatccgcaccgtccccggaccgccgggagagccggggcgacaggggtctcca
ggacctcagggagagcaggggccacctggacgacccggattccccggcagtaacggagag
aatggccagcctggagccagaggccctccaggtgagaagggagagaaaggtaatccaggt
gtaggtgtacagggaccgagaggtgccgccggacctccaggaccacctggtgaagggagg
acaggaagtccaggtccgtctggtcgccccggtaaccccgggagtcccggcagatctgga
ataccaggaccagtgggtccaccaggaccggccggatactgcgaccagaacgcctgcctc
gggtacaatgtgggagaaccaggctttgatggtgacctcactgacggagatgttcctgca
gttcaactgccgtccagctcgtaccagccgtacggacccgaggccgaggctgaggaagac
gacccctacggaagctacggctcctactaccagcccaactaccctccgcctcgccccgtc
cagcccgacgaccccgtcatagcgtcggaggtggaggagctgcgctcgccgggcatacag
cgacagacgcgcagcctcgcagacctgcgcagacggcagcctagaagagcagctcagagg
acgtaa
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