Megalobrama amblycephala (Wuchang bream): 125276898
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Entry
125276898 CDS
T08212
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125276898 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mamb03041
]
125276898 (ddx42)
Enzymes [BR:
mamb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125276898 (ddx42)
Spliceosome [BR:
mamb03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
125276898 (ddx42)
Complex B
125276898 (ddx42)
Complex C
U2 SnRNP specific factors
125276898 (ddx42)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
125276898
NCBI-ProteinID:
XP_048060810
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All DBs
Position
LG1:complement(59100152..59108544)
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AA seq
902 aa
AA seq
DB search
MSMNWNKGGPSAKRGFGFGGFSLASGKKEEPPVSQKAHSAFGSSGPSGGYGKNQQLSSFY
KIGTKRANFDEENAYFEDDEEESSSADLPYIPAENSPTRKQFQSGGGGGGGGGSDSEDDP
LDAFMAEVEDQAAKDMKKLEEKEKEKNMAKGIRDDIEEEDDQEAYFRYMAENPTAGLTQE
EEEEEVDYDSDGNPIAPTTKKIILPLPPIDHSEIDYPPFEKNFYIEHEELSSLTGAGVVE
LRQKLNLKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPISLSGRDMI
GIAKTGSGKTVAFIWPMLVHIMDQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKVYG
LRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFD
MGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQI
VEVLLSGKEKWGWLTRRLVEFTSAGSVLVFVTKKANCEELATNLNQEGYSLGLLHGDMDQ
SERNKVIADFKKKNLPILVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGE
KGVAYTLLTTKDTSFAGDLVRNLEGANQSVSKDLMDLAMQNPWFRKSRFKGGKGKKINIG
GGGLGYRERPGLGSESTERSSSSGGAALGNYEAYKPSTGAMGDRMSALKQAFQAQYKNHF
VAASGVPPKLTTKSSSSSGWTSAGSLSSLPSGAPEGPDRPHLPYSPTSSSSFSSMAPPPA
LSSGTKMSGFSSAGSLSSVSDSYSSSSSKEGSRSDRNADDRGRHGDSHYRHGDRHSGVDR
DRYGERDRYSDRDRHGDSRNGEGSHRDREGRSERDGGERSGTHKDSFAVPDPPKRKKSRW
DN
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatgaactggaacaagggaggcccgagtgccaaacgaggctttggattcggggga
ttctctcttgcgagtgggaagaaagaggagcctcctgtttcccagaaggcccactccgca
tttgggagttcaggaccatcaggtggatatggcaagaatcagcagctttcgtctttttac
aaaataggaacaaaacgagccaatttcgacgaggagaatgcttattttgaggatgatgaa
gaggagtctagcagtgcagatctgccatatatacccgccgagaactctcccactagaaag
cagttccaatctggaggtggaggtggagggggaggaggctcagacagtgaggatgacccc
cttgatgcctttatggctgaggtggaggaccaagcagcaaaagacatgaagaaacttgag
gaaaaggaaaaagagaaaaatatggccaagggtatacgggatgacattgaagaagaagat
gaccaagaagcatatttccgttacatggcggagaacccaacagctgggttgacccaagag
gaagaggaggaagaagtggattatgacagcgatgggaatcccattgctcctactaccaaa
aagattatcttgcccctgccccctatagatcactcagagattgactatcctccctttgag
aagaacttctatattgagcatgaggaactcagcagtttgactggggctggagtggtggaa
ctgagacagaaactcaacctgaaggtttcaggtgcagcccctcctaaaccagctaccagt
tttgcccactttggatttgatgaacagcttatgcaccagatccgtaaatccgagtacact
caacccacacccatccagtgccagggtgttcccatatctttgagtggtagagacatgatt
ggcattgccaaaaccggcagcggaaagacagtagcatttatttggccaatgctggtgcac
atcatggaccagaaggagctggagccgggagaaggacccattgctgtgattgtctgcccc
accagagagctgtgtcaacagatccatgccgaatgcaagcgcttcgggaaggtatatggc
ctccgctcagtggcagtgtacggaggcggcagcatgtgggaacaagccaaagctctacag
gaaggggctgaaattgttgtctgcaccccaggtcgtctgatcgatcatgtgaagaagaaa
gctacatctctgcagcgagtgacctacctggtatttgatgaagctgatcgcatgtttgat
atgggctttgaataccaagtgagatccattgccagccacgtcagacctgatcgacagact
ctcttattcagtgcaacatttcggaagaaaatcgaaaagctggcacgagatattttgatc
gaccccatccgtgttgtccagggtgacataggagaggctaatgaagatgtcactcagata
gtggaggtgctgctgtctgggaaagagaagtggggttggctgacgcgcaggctggtggag
tttacctccgctggctcagtgctggtctttgtcactaaaaaggctaactgcgaggagctg
gctacaaatttgaatcaggaaggttatagcctgggactgctccatggagacatggatcag
agtgagaggaacaaagtaattgctgactttaagaagaagaatctgcccatattggtagct
actgatgttgctgctcgtgggttggatattccatctatccgtacagtcgtgaactacgac
gtagcacgagacattgacacacacacacatcgaattggtagaacaggtcgtgcaggagag
aaaggtgtagcttacaccctgctcaccactaaagacacttcatttgctggtgacctggtt
cgcaatttagagggagccaatcagagtgtttcaaaggacctgatggacctggcaatgcag
aatccctggttcaggaaatcccgctttaagggtgggaaagggaagaagataaatattgga
ggtggaggcctgggttacagggagagacctggccttggatctgaatccactgagcgcagt
agtagtagtggtggtgctgctctcggtaactatgaggcctacaaaccctcaactggagcc
atgggagaccgtatgtctgccctgaagcaagcatttcaggctcagtataaaaaccacttt
gtggcggcatctggtgttccacctaaacttaccacaaagtccagcagctcttctgggtgg
accagtgcaggaagtctaagctctttgccttcaggagcacctgaggggcctgacagaccc
cacctgccctactcgccaacgtcctcttcctcattttcctccatggcgccgccccctgcc
ctcagctcaggcaccaaaatgagtggcttcagtagcgcgggctccctgagctcagtttca
gactcttactctagctcttcttcaaaagaggggtcccgtagcgataggaatgctgacgac
aggggtcgtcatggagatagtcattatcgtcatggtgataggcatagtggggtagaccgt
gatcgctacggggaaagggaccgctacagtgacagagatcgtcatggcgatagccgaaac
ggtgaagggagccatagggacagagagggacggtcagaacgagatgggggtgaaaggtca
gggactcataaggacagctttgcagttcctgatccccccaaacgtaagaaaagcagatgg
gataattaa
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