Megalobrama amblycephala (Wuchang bream): 125277341
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Entry
125277341 CDS
T08212
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b isoform X1
KO
K08131
collagen type IX alpha
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb04510
Focal adhesion
mamb04512
ECM-receptor interaction
mamb04518
Integrin signaling
mamb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125277341 (col9a1b)
04518 Integrin signaling
125277341 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125277341 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125277341 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
mamb00535
]
125277341 (col9a1b)
Proteoglycans [BR:
mamb00535
]
Extracellular matrix (ECM) proteoglycans
Others
125277341 (col9a1b)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
125277341
NCBI-ProteinID:
XP_048061700
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Position
LG10:30230936..30277026
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AA seq
922 aa
AA seq
DB search
MIWREVCLYLLCNMIKQCISTGLHAHVMPFSSMSHLQTDQTVCPQTKEGNGLFPGFYIMT
QFNIAEMARRGMVKKVPGTTSQHVAYKIGSEFNFRINTRSAFPMGLPEEFAFSATYRMSG
NTPNKSWNMWQMQDPNEKEQLAVRLNGEALSVEFSYRTQENRAMTALFPYQTHLFNSQWH
NILLLVKKGSVSLITDCMVTDSQQLAPRGQVNLDGFTHIGKLKDNSAIAVPFELQSMLIH
CDLNIPQRDACGDLPARRQITEAEFKRAGAGPPGPPGVPGIDGIAGERGDPGEEGSAGPD
GDTGKPGSAGLPGLPGADGLTGPIGEPGLDGPPGQKGEPGKPGPRGEAGVGPDGPIGQPG
PGGLPGELGKVGTPGAMGVRGPQGPRGPTGPRGAAGMLGGTMELCPNACPAGAPGHPGLP
GMKGHKGVKGEAGEPGKQGHKGEEGDQGASGEVGAQGPTGPQGIRGATGMIGSKGELGLR
GVDGVPGPQGVAGATGDRGQRGGMGEAGPKGEQGPQGPRGNTGLPGPKGDGGLPGVDGRE
GIPGMPGAKGTTGKAGSPGEVGLQGLPGLPGSPGPKGGAGEKGNAGQPGLIGTMGSAGRA
GEHGGQGELGPIGPIGQPGDRGEQGPPGPMGKPGARGPKGDLGLPGLPGPPGLPGIKGDR
GEAGEPGPKGEQGDQGAEGTPGDKGDLGDPGQPGAKGEVGNQGDPGNRGPEGGRGQPGIE
GPPGSPGPRGMQGNRGSPGPRGSQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPES
GAVGLPGKPGPPGPPGPPGDSGFPGHAGARGLPGLKGPPGILGLKGPKGEMGDRGDRGPT
VRGSKGMPGPPGLPGEPGKPGYGQDGRDGERGLPGSPGQPGVPGPPGSAGPPGYCDPSAC
NLSAGAAHQSLKDSSMKGPGGN
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgatctggagggaagtttgtctctacctgttgtgtaatatgatcaaacaatgcatctcc
actggtcttcatgcacacgtcatgccattttccagtatgagccacctgcagacagaccaa
actgtgtgtcctcagactaaagaagggaatggattatttccaggattttacataatgact
cagttcaacattgctgaaatggccaggagagggatggtgaagaaggtgcctggaacgaca
tcgcaacatgtagcatataagattggctctgagttcaacttcaggatcaacaccagatct
gcatttcccatggggctgcctgaggaatttgcattttctgcgacctatcggatgagtggc
aataccccgaataagagctggaatatgtggcaaatgcaagatccgaatgaaaaggaacag
ctcgcagtcagactcaatggggaggccctgtcagtggagttctcatacagaacccaggag
aacagagcgatgacggctttattcccttaccaaacacatctcttcaattctcagtggcac
aacattttactgcttgtcaaaaaaggctctgtgagtctcataacagattgtatggtaaca
gattcacagcagctggcaccaagaggacaagtaaacctagatggattcacacatattgga
aaactgaaggacaattcagcaatagctgtgccgtttgagctgcagtcaatgctgattcac
tgcgacttaaacatcccgcagagagacgcatgcggtgaccttcctgcaaggagacagata
accgaggcagagtttaagagggctggtgctggccctcccggtcctcccggtgtgcctgga
atagacggcattgctggggagagaggtgaccccggtgaagagggttcggctggtcctgat
ggagatactggaaaacctggttctgctggacttcctggattacctggagccgatggattg
actggccctataggagaaccaggcctcgatggccctccaggacaaaagggggaacctggc
aaacctggacccagaggagaggcaggtgttggacctgatggaccaattggacaaccagga
ccaggaggacttccgggcgagctgggaaaagtgggaacccctggagcaatgggtgtgaga
gggccacagggaccccgtggaccaacagggccccgtggtgctgcagggatgctgggagga
acaatggaactgtgccctaatgcttgcccagctggtgcacctggtcatcctggtttgcct
gggatgaagggtcataaaggggtgaaaggagaagccggagagcctggtaaacaaggacac
aagggagaggagggagatcagggggcatctggagaggtcggcgctcaaggcccaactggg
ccgcagggaattcgaggtgccactggtatgattggctccaaaggagaattgggccttcga
ggtgttgatggtgtcccaggccctcagggggttgcaggggcgacgggggatcgaggccaa
agaggaggaatgggagaagctggacctaaaggtgaacagggacctcaagggccaagaggc
aacacaggtcttccagggccaaagggagatggtggtttgccaggtgtggatggacgtgag
ggaatccctggcatgccaggtgccaagggtaccacaggaaaagctggtagccctggggaa
gtcggccttcaaggactccctggtttgccaggaagcccggggccaaaaggtggagcagga
gagaagggtaatgcaggacaaccaggcctcattggcactatgggatctgcaggcagagcg
ggtgagcatggaggacaaggagaattgggacccatcgggcctattggacagcctggagac
agaggagagcaggggccacctggaccaatgggaaaaccaggagccagaggtccgaaaggt
gacttgggcttgcctggacttcctggaccgccgggccttccaggaataaaaggagatagg
ggtgaagcaggagaacctggaccaaagggagaacagggagatcaaggtgccgagggaacg
ccaggagacaagggagatcttggtgatcctggccaacctggagctaaaggagaagttggt
aaccagggagatccgggtaatagagggccagaaggtggccgtgggcagcctggcattgag
gggcctcctggtagtcctggaccacgtggcatgcaggggaacagaggatctccaggtcct
cgtggctcccagggaccagcgggtaaagaaccaagtgatcaacacatcagacaagtctgt
atgcgagttatgcaggagcagctggcccagttggctgccagtctgagaagaccagagtct
ggagcggtcggactgccaggcaaacctggtccccccggtcctcctggacccccaggtgac
agcggcttccctgggcatgctggtgcaagaggacttccgggactcaaagggcctccggga
attctgggtctcaaggggccgaaaggtgagatgggagacagaggggacaggggacctaca
gttcgaggatccaaagggatgccgggacctcctggattaccaggtgaacctggaaaaccg
ggatacggtcaagacgggcgtgatggagaaaggggtctacctggttccccaggtcagccg
ggcgttcctggacctcccggttcagccggaccacccggttactgcgatccttcggcctgt
aatcttagcgcaggcgccgcccaccagtctctgaaagactctagcatgaagggaccgggc
ggaaactaa
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