KEGG   Megalobrama amblycephala (Wuchang bream): 125279425
Entry
125279425         CDS       T08212                                 
Symbol
ercc8
Name
(RefSeq) LOW QUALITY PROTEIN: DNA excision repair protein ERCC-8
  KO
K10570  DNA excision repair protein ERCC-8
Organism
mamb  Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03420  Nucleotide excision repair
mamb04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:mamb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    125279425 (ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    125279425 (ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mamb04121]
    125279425 (ercc8)
   03400 DNA repair and recombination proteins [BR:mamb03400]
    125279425 (ercc8)
Ubiquitin system [BR:mamb04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     125279425 (ercc8)
DNA repair and recombination proteins [BR:mamb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      125279425 (ercc8)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_TEP1_C WD_LRWD1 Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N Beta-prop_WDR75_2nd Beta-prop_RIG_1st Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_RSE1_2nd Beta-prop_SCAP Beta-prop_IFT140_1st NadA
Other DBs
NCBI-GeneID: 125279425
NCBI-ProteinID: XP_048065045
LinkDB
Position
LG12:11156703..11170567
AA seq 400 aa
MLSFLYARQSGLDDPVRLRRAESTRRVLSLELNHNRDVDRVHGNGINTLDIEVVDGRYML
SGGSDGVIVIYDLENNSKKLKYSCKVVCTVGRSSRHVHKFSVETVQWYPHDTGMFVSSSF
DKTMKVWDTETLKPAEEFQFDGNVYCHHMSPIARKHSLVAVGTKDPKVQLCDLKSGSRIH
ILQGHRGEILXVRWSPRYEHILATASTDSRVLVWDVRRASGSLFTLDQHNGDKSKASSEA
VNTAHNGRANGLCFTADGLHLLTTGTDDRMRLWNSATGENTLVNYGKVVNESRKGLKFTV
SRGCSPEFVFVPCGTSVAVYGLHSGELITMLRGHYNNVDCCEFHPDYQELYSGGKDCNIL
AWVPVLRQPDIEDEETNSKRGGTQAAVNPAFEDAWSSDED
NT seq 1203 nt   +upstreamnt  +downstreamnt
atgctgagttttctttatgccagacagtcggggcttgacgacccagttcgactgagacgt
gcagaatccacacgaagggtgctgagtctggagttgaaccacaacagagatgtggatcgt
gtccatggaaatggaattaacaccctggacattgaggttgttgatggaagatatatgttg
tcaggtggatctgatggtgtaatcgtgatctatgacttggaaaacaacagcaagaagctt
aaatactcttgcaaagtagtttgcacagtaggcaggtccagtcggcatgtgcataaattc
agcgttgaaacagtgcagtggtacccgcatgacacaggtatgtttgtgtccagctcattt
gacaaaaccatgaaagtttgggacacagaaactctgaagccagctgaggagttccagttc
gatggtaatgtctactgtcatcacatgtcacctatagccaggaagcacagtcttgtagca
gttggtaccaaagaccctaaagtgcagctttgtgatctgaagtctgggtcgcgcatccac
atcctacagggtcacaggggcgagatccttncagtgagatggtctccacgatatgagcac
atcctggccaccgccagcactgacagtagggtcctcgtctgggatgtgagaagagcctcg
gggagtctttttactttggaccagcacaatggagacaaatccaaggcctcatctgaagca
gttaacacagcacacaatgggcgagcaaatggattgtgcttcacagctgacggacttcat
ctcctcactactggtacagatgatcgcatgcgcctgtggaatagtgccacgggggaaaac
acattagtgaactatgggaaagtcgtgaatgagagccgcaaaggcctcaagtttaccgta
tcgaggggctgcagtccggagtttgtgtttgtgccatgtggcacttcggtagcagtgtac
gggcttcactcgggagagctgatcactatgttgagaggacattataataatgtagactgc
tgtgagttccacccagattatcaggagctgtacagtggaggtaaagactgtaacatcctg
gcctgggtcccagtgctaagacagcctgacattgaggatgaagaaaccaactctaaacgg
ggtggaacacaagctgcagtcaatcctgcttttgaagacgcctggagcagcgacgaagac
tga

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