Megalobrama amblycephala (Wuchang bream): 125279707
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Entry
125279707 CDS
T08212
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb04510
Focal adhesion
mamb04512
ECM-receptor interaction
mamb04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125279707 (col2a1a)
04518 Integrin signaling
125279707 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125279707 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mamb00536
]
125279707 (col2a1a)
Glycosaminoglycan binding proteins [BR:
mamb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125279707 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
125279707
NCBI-ProteinID:
XP_048065623
LinkDB
All DBs
Position
LG12:13858534..13882230
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AA seq
1498 aa
AA seq
DB search
MLHSLLAFKEWTKSFTFGRKAWRVLNLRARIGLLTPDANHEEDLGSCIQDGKQYADRAVW
KPEPCRVCVCDTGAVLCDEVICEDVTDCDNPIIPLGECCPICPAETDEPIAESVGAKGQK
GEPGDIADVVGPRGPAGPMGPPGEQGPRGERGSKGEKGNPGPRGRDGEPGTPGNPGPPGP
PGPSGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGE
TGEPGPAGALGPRGPPGPPGKSGSDGEAGKPGKPGDRGPPGPQGARGFPGTPGLPGIKGH
RGHPGIDGAKGEAGAAGAKGEAGSNGESGAPGPMGPRGLPGERGRPGATGAAGARGNDGL
PGPAGPPGPVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGEAGTPGSPGPAGASGN
PGTDGIPGAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGP
KGERGVVGPQGAPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGA
PGDRGVPGVTGPKGGTGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGAPGAPGEDGRPGP
PGPLGARGQPGVMGFPGPKGANGEPGKTGEKGLVGRPGLRGLPGKDGETGTAGPPGPAGP
VGERGEQGQPGPSGFQGLPGPTGAPGEPGKPGDQGVPGEGGAAGPTGPRGERGFPGERGG
AGPQGLQGPRGLPGTPGTDGPKGAIGPAGAAGAQGPPGLQGMPGERGAVGIAGAKGDRGD
SGEKGPEGAPGKDGARGLTGPIGPPGPSGPNGAKGETGAIGPIGAPGARGAPGDRGEIGA
PGPAGFAGPPGADGQPGIKGEQGESGQKGDAGSPGPQGPSGAPGPVGPTGVTGPKGARGA
QGAPGATGFPGAAGRVGPPGPNGNPGPAGPAGAAGKDGPKGVRGDAGPPGRAGDAGLRGP
PGSPGEKGEPGEDGPPGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGA
PGSSGDRGPPGPVGPPGLTGPAGETGREGNPGSDGPPGRDGAAGVKGERGNTGPIGAPGA
PGAPGAPGSVGPVGKQGDRGENGPQGPAGPPGPAGARGMVGPQGPRGDKGEAGEAGERGQ
KGHRGFTGLQGLPGPPGSPGDQGAAGPAGPSGAKGPAGPVGPAGKDGSNGQPGPIGPPGP
RGRSGESGPIGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKGPDPLRYMRADEASSSLR
QHDVEVDATLKSINSQIEDIRSPDGSRKNPARSCRDLKLCHPEWKSGDYWVDPNLGSSAD
AIKVFCNMETGETCVKPSTPKIPRKNWWSNKGKGQKHVWFGESMNGGFHFSYADSSQTPS
TTSIQLNFLRLLSTEATQTITYHCKNSVAYMDQATGNLKKAILLQGSNDVEIRAEGNSRF
TYGVLEDGCQKHTGQWAKTVIEYKTQKTSRLPIVDIAPIDIGGADQEFGVDIGAVCFL
NT seq
4497 nt
NT seq
+upstream
nt +downstream
nt
atgcttcattcccttctagctttcaaagaatggacgaaaagcttcacatttggaagaaaa
gcctggcgggtgcttaatcttcgggcacggatcggccttctgacgcccgatgccaatcac
gaggaagatttaggcagctgcatccaagatggcaagcagtatgcagaccgtgctgtatgg
aagccagaaccgtgccgcgtctgcgtgtgcgacactggggcagtgctgtgtgacgaggtc
atctgtgaggatgtgacagactgtgacaatcccatcattccacttggagagtgctgtccc
atctgcccagctgaaaccgacgagcctatcgcagagtcagttggtgccaagggacagaaa
ggtgaaccaggcgatattgcagatgtggtaggaccaagaggacctgctggcccaatggga
cccccaggagagcaaggaccacgtggcgagagaggatctaagggtgagaagggaaatccc
ggcccaagagggagagatggcgagcctggtacacctggaaacccaggaccccctggacca
ccaggacctagtggacttggaggaaactttgctgctcagatggctggaggttttgatgag
aaggcaggaggtgctcagatgggtgtgatgcagggaccaatgggtccaatgggtccccgt
ggtcctcccggtccctctggagcacctggcccacaaggtttccaaggcaaccctggagag
actggtgaacccggccctgctggtgccctcggaccccgtggcccaccaggcccccctgga
aaatctggaagtgatggtgaggctggcaaacctggtaagcctggtgaccgtggaccccca
gggcctcagggagcccgtggattccccggaactcctggccttcctggaatcaagggacac
agaggacacccaggtattgatggagctaaaggagaggctggtgctgcaggtgctaagggt
gaggctggttctaatggtgagagtggtgctcctggaccaatgggtccacgtggtctgccc
ggtgagagaggtcgtcctggtgcaactggtgctgctggtgcccgtggtaatgatggtctg
cctggtcccgctggtcctcctggtcctgttggtcctgctggagctccaggtttccctgga
tcccctggttctaagggtgaagctggtcccaccggagctcgtggacctgagggtgcacaa
ggaccccgtggagaggctggaacacctggatcacctggacctgctggtgcatctggtaac
cctggtactgatggtattcctggagccaaaggatctgctggtgcttctggcattgctggt
gcccctggtttcccaggaccccgtggcccgccaggacctcagggagctactggacctctt
ggacctaaaggacaatctggagaccctggtatccccggatttaaaggcgaggctggaccc
aagggagagcgtggtgttgtaggacctcagggtgcccctgggccatctggagaggaagga
aagagaggaccaagaggagagcctggttctgccggacctctcggaccccctggagagaga
ggagctccgggtaaccgtggattccccggtcaggatggtctagctggagcaaagggtgca
cctggtgatcgtggtgttccaggtgtgaccggaccaaaaggagggactggagatcctggc
cgcacaggcgagcctggtcttcctggagccagaggtctgactggacgccctggtgatgct
ggacctcaaggaaaagttggagcacctggtgcccctggtgaagatggacgccctggacct
cctgggcctctgggagctcgtggtcagcctggagtgatgggattccctggacctaaggga
gccaatggtgaacctggaaaaactggagagaaaggacttgttggacgccctggtcttaga
ggtttgcctggtaaagatggagagactggaactgctggtccacctggccctgctggtcct
gttggtgagagaggagagcaaggtcagcctggtccatctggcttccagggtcttcctgga
cctactggagcccccggagagcccggtaaacctggtgaccagggtgttcctggagagggt
ggtgctgccggtcccactggaccaagaggtgaacgtggtttccctggtgagagaggaggt
gctggccctcagggtctccagggaccaaggggacttccaggaactcccggaactgatgga
cctaagggtgccattggaccagctggcgctgctggagctcagggccctcccggtctgcag
ggcatgcctggtgagagaggagctgttggaattgctggagctaaaggtgacagaggtgac
agcggagagaaaggacctgaaggtgctcctggcaaagatggtgcaagaggtttgactggt
ccaattggtccacctggtccttctggtcctaatggtgcaaagggtgaaactggagccatt
ggcccaattggtgctcctggtgctcgtggtgcccctggcgaccgtggtgagattggtgca
cctggacctgctggctttgctggaccccctggtgctgatggccagcctggaattaaggga
gagcagggtgagtcaggacagaaaggtgatgcaggatcccctggaccccaaggaccatcc
ggagcacctggtccagtgggcccaactggtgttacaggacctaagggagcacgtggagcc
caaggagcccctggtgccactggtttcccaggtgctgcaggaagagttggaccacctggc
cccaatggtaaccctggtcctgctggcccagcaggtgctgctggtaaggatggtcctaag
ggagttcgtggtgatgccggtccaccaggtagagcaggagatgctggactgcgtggacct
cctggttctcctggagagaagggagagcctggagaggatggtcctcctggtcctgatggt
ccttctggtcctgctggtcttgctggtcagcgtggtattgttggtttgcctggtcagcgt
ggtgaaagaggtttcccaggactcccaggaccctctggtgagcctggcaaacagggagct
cctggttcttctggtgaccgtggaccacctggccctgttggacctcctggattgactgga
cctgctggcgagactggacgtgagggtaatcctggatctgatggtccacctggtagagat
ggtgctgctggtgtgaagggtgagcgtggtaacactggcccgattggtgctcccggagct
cctggtgcccctggtgctcctggttccgttggtccagttggcaaacagggagacagagga
gagaatggcccacaaggacctgctggcccccctggaccggctggagctagaggcatggtt
ggaccacaaggacctcgtggtgataagggtgaggcaggagaagctggagaaagaggtcag
aagggacacagaggattcaccggtctgcagggtctgccaggacctcctggttctcctgga
gaccagggtgctgctggacctgctggaccaagtggcgctaagggacctgcaggacctgtt
ggaccagctggtaaggacggttctaatggtcaacctggacccattggaccacctggacct
cgtggacgctctggagagtctggcccaattggtccacctggtaaccctggacctcctggt
cctcctggtccccctggccctggcattgatatgtctgccttcgctgggttgtctcagccc
gagaaaggacccgatcctctgcgttacatgcgtgccgatgaggcctccagctctcttaga
caacatgatgttgaggtggatgccacactgaagtcaatcaacagccagatcgaggacatt
cgcagccccgatgggtcccgcaagaaccctgcacgctcctgccgagacctgaaactctgc
caccctgaatggaagagcggtgactactgggttgatccaaaccttggtagcagtgctgat
gccatcaaagtcttctgtaacatggagactggagagacctgtgtgaagcccagcactccc
aaaatcccacgcaagaactggtggagcaataagggcaagggacagaagcacgtgtggttt
ggagagagcatgaatggtggattccactttagctatgctgatagcagccagactcctagt
actaccagcatccagctgaacttcctgagactgctgtctactgaggccactcagaccatc
acctaccactgcaagaacagcgtggcttacatggaccaagccacaggcaacctgaagaag
gccattctgctgcagggctccaatgatgtggagatcagagcagagggcaacagtcgcttt
acatatggcgtgcttgaggatggctgtcagaagcacacaggtcagtgggccaagactgtg
attgagtacaaaactcagaagacatccaggctgcccatcgtggacattgctccaatagac
atcggaggagcagatcaggagtttggagtggacattggtgcagtctgcttcttgtaa
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integrated database retrieval system
