Mycteria americana (wood stork): 142403397
Help
Entry
142403397 CDS
T11228
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mame Mycteria americana (wood stork)
Pathway
mame03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mame00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142403397 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mame03019
]
142403397 (XAB2)
03041 Spliceosome [BR:
mame03041
]
142403397 (XAB2)
Messenger RNA biogenesis [BR:
mame03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
142403397 (XAB2)
Spliceosome [BR:
mame03041
]
Complex B
Other components
Prp19-related factors
142403397 (XAB2)
Complex C
142403397 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_C
HAT_PRP39_N
TPR_12
TPR_2
TPR_19
TPR_8
Suf
TPR_7
TPR_15
TPR_16
ARM_TT21_C
TPR_1
ARM_TT21
PPR
Motif
Other DBs
NCBI-GeneID:
142403397
NCBI-ProteinID:
XP_075345751
LinkDB
All DBs
Position
Unknown
AA seq
641 aa
AA seq
DB search
MHKMPRIWLDYCQFLVEQGRITRTRRTFDRALRALPITQHHRVWPLYLQFVRRYPLPETA
VRVYRRYLKLSPESAEEYVGYLRSVGRLDEAAVRLARLVNDERFVSKEGKSNYQLWQELC
ELLSQHPERVRSLDAGAIIRGGLTRFTDQLGRLWGALADCYIRSGHFEKARDVYEEAVQT
VMTVRDFTQVFDSYAQFEESVIAAKMETVAELGREEDEEVELELRLARFEQLMARRPLLL
NSVLLRQNPHNVHEWHKRVQLYQGRPEQIINTYTEAVRTVDPFKATGRPHGLWVAFARFY
EDNGQLDDARTILTKATRVRFRQVEDLAAVWCEFGEMELRHENYDEALRILRKATALPAK
RAEYFDSTEPVQNRLYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYG
LFLEEHGYFEESFKAYERGIALFRWPNVADIWHTYLSKFVARYGGRKLERARDLFEQALD
GCPPKYAKTIYLLYAKLEEEFGLARHAMGVYERATRAVLPAQQHEMFNIYIKRAAELYGV
THTRPIYQKAIEVLGDDAARELCLRFADMECKLGEVDRARAIYTYCSQICDPRITGTFWQ
TWKDFEIRHGNEDTIREMLRIKRSVQATYNTQVNFMASQML
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgcacaagatgccccgcatctggctggattactgccagttcctggtggagcagggccgc
atcacgcggacgcgccgcaccttcgaccgggcgctgcgggcgctgcccatcacccagcac
caccgcgtctggcccctctacctccagttcgtgcgccgctaccccctgcccgagaccgcc
gtccgcgtctaccgccgctacctgaagctgagccccgagagcgcggaggagtacgtgggg
tacctgcgctccgtggggcgcctggacgaggccgccgtgcgcctggcccggctcgttaac
gacgagcgcttcgtctccaaggagggcaagtctaattaccagctgtggcaggagctgtgc
gagctgctctcccagcacccggagcgggtgcgctcgctggacgcgggggccatcatccgg
gggggcctcacccgcttcaccgaccagctgggccggctctggggcgccctggccgactgc
tacatccgcagcggccacttcgagaaggcccgggacgtctacgaggaggcggtgcagacg
gtgatgacggtgcgggacttcacccaggtcttcgacagctacgcccagttcgaggagagc
gtcatcgccgccaagatggagacggtcgcggagctgggccgggaggaggacgaggaggtg
gagctggagctgcggctggcccgcttcgagcagctgatggcccggcgcccgctgctgctc
aacagcgtcctgctgcgccagaacccccacaacgtccacgagtggcacaagcgggtgcag
ctctaccagggacgccccgagcagatcatcaacacctacacggaggccgtccgcaccgtg
gaccccttcaaggcgacggggcgcccgcacgggctgtgggtggccttcgcccgcttctac
gaggacaacgggcagctggacgacgcccgcaccatcctgaccaaggccacccgcgtccgc
ttccggcaggtggaggacctggccgccgtctggtgcgagttcggggagatggagctgcgc
cacgagaactacgacgaggccctgcgcatcctgcggaaagccacggcgctgcccgccaag
agggccgagtacttcgactccacggagcccgtccagaaccgcctctacaaatccctcaag
gtctggtccatgctggccgacctggaggagagcctgggcaccttccagtccaccaaggcg
gtgtacgaccgcatcctggacctgcgcatcgccaccccccagatcgtcatcaactacggc
ctcttcctggaggagcacggctacttcgaggagagcttcaaggcctacgagcggggcatc
gcgctcttccgctggcccaacgtggcggacatctggcacacctacctcagcaagttcgtc
gcccgctacggcgggcgcaagctggagcgggcgcgggacctcttcgagcaggcgctggac
ggctgcccccccaaatacgccaagaccatctacctgctgtacgccaagctggaggaggag
ttcgggctggcgcggcacgccatgggggtgtacgagcgcgccacccgcgccgtcctgccc
gcccagcagcacgagatgttcaacatctacatcaagcgggcggccgagctctacggcgtc
acccacacccgccccatctaccagaaggccatcgaggtgctgggtgacgacgcggcgcgg
gagctctgcctgcgcttcgccgacatggagtgcaagctgggggaggtggaccgggcgcgc
gccatctacacctactgctcccagatctgcgacccccgcatcacgggcaccttctggcag
acctggaaggactttgagatccgccacggcaacgaggacacgatccgggagatgctgcgc
atcaagcgcagcgtccaggccacctacaacacccaggtcaacttcatggcctcccagatg
ctc
DBGET
integrated database retrieval system
