Mycteria americana (wood stork): 142403420
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Entry
142403420 CDS
T11228
Symbol
SKIC2
Name
(RefSeq) LOW QUALITY PROTEIN: superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mame Mycteria americana (wood stork)
Pathway
mame03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mame00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142403420 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mame03019
]
142403420 (SKIC2)
Enzymes [BR:
mame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142403420 (SKIC2)
Messenger RNA biogenesis [BR:
mame03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
142403420 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
142403420 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
Helicase_C
MTR4-like_stalk
DEXQc_Suv3
DUF3516
ResIII
Motif
Other DBs
NCBI-GeneID:
142403420
NCBI-ProteinID:
XP_075345774
LinkDB
All DBs
Position
Unknown
AA seq
898 aa
AA seq
DB search
HHLHLPIKALSNQKFRDFKATFGDVGLLTGDVQLRPEASCLIMTTEILRSMLYNGSDVIR
DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVKLILLSATIPNAFEFAQWVGRTKRRRL
RVISTRQRPVPLEHFLYTGNSPRTRHQLFLLLDARGNFSTQGYYAAVEAKKERTSKHAQT
FGAKQPTMGGTGPGQDRGVWLALLXLLREREQLPVVAFTFSRSRCDEHADALGSLDLVSS
AERGRIRLFFQRCVSRLRGSDRRLPQVVHMAELLQXGIGVHHGGVLPLLKEVVEMLFSQG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGNNFXDLLPGEYVQMSGRAGRRGLDSTGT
VIILCKGPVPEMADLHRMMLGRPTRLQSQFRLTYSMILNLLRAQALRVEDMMRRSFSEFP
LRRDAPAQERRVAELRRALAALGEPGPGGAEAELGGVPGWFGGVPGVPSERGSRGPQRRL
AQSPAGLRALAPGRVVVVCTPRHRNALGLILQVSPEGSGRAFTALVLSEKPPEEGGPAGP
PPDVPDVPYPEDLLLTRLFVPEGPCGHALEKLQPEDIGGITAKTLRVNPEKLLQELRPRQ
GPRHRPEPPGTEVGAAVQELARLAGGAPGGLPLLDPVGALQLRDPEAVEAAAEARALAAS
LGSFRCVHAPRFPQQYAQFAAREELLEQLEHLQFLLSDQSLLLLPEYHQRVAVLRALGYV
AEGGAVALGGRLASLLSAHELVLTELLLGNVLAPLRPEESVALLSCMVCPGRGEPPPRLP
PPLQQGMEQVRAVAQRVGRLQQECGLSQSVEEFVEQFGFGLVEVVYEWARGMPFADIARL
AAVQEGAVVRCIQRLEETCREVRQAARMVGEPALAAKMEAASNMIKRDIVFAASLYTQ
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
caccatctacacctccccatcaaggcgctttccaaccagaagttccgcgacttcaaggcg
acgttcggggacgtggggctgctgacgggggacgtgcagctgcgccccgaggcctcctgc
ctcatcatgaccaccgagatcctgcggtcgatgctctacaacggctccgacgtcatccgg
gatctggagtgggtcatcttcgacgaggtgcactacatcaacgacgcggagcgcggcgtg
gtgtgggaggaggtgctgatcatgctgcccgagcacgtcaagctcatcctgctcagcgcc
accatccccaacgccttcgagttcgcccagtgggtcggccgcaccaagcgccggcgcctg
cgggtgatcagcacgcggcagcgcccggtgccgctggagcacttcctctacaccgggaac
agcccccgcacccgccaccagctcttcctgctgctcgacgcccgcggcaacttcagcacc
caagggtactacgccgccgtggaggccaagaaggagcgaaccagcaaacacgcgcagacc
ttcggggccaagcagcccaccatggggggcaccggccccgggcaggaccggggggtctgg
ctggcgctgctgnggctgctgcgggagcgggagcagttgcccgtcgtcgccttcaccttc
tcccgcagccgctgcgacgagcacgccgacgcgctgggctccctcgacctggtctccagc
gccgagaggggccggatccggctcttcttccagcgctgcgtctcccgcctgcgcggctcc
gaccgccgcctgccccaggtggtgcacatggcggagctgctgcagngcggcatcggggtg
caccacggcggggtgctgcccctgctcaaggaggtggtggagatgctcttcagccagggg
ctggtcaaggtgctcttcgccaccgagaccttcgccatgggggtgaacatgccggcccgc
accgtcgtcttcgactccatccgcaagcacgatggcaacaacttcngggatctcttgcct
ggggagtacgtgcagatgtcggggcgcgcagggcggcgggggctggactccaccggcacc
gtcatcatcctctgcaaggggcccgtccccgagatggccgacctgcaccgcatgatgctg
ggccgccccacgcgcctgcagtcccagttccgcctgacctactccatgatcctcaacctg
ctgcgggcgcaggcgctgcgcgtcgaggacatgatgcggcgcagcttctccgagttcccc
ctgcggcgggacgcgccggcgcaggagcggcgcgtggcggagctgcggcgggcgctggcg
gcactgggggagccggggccggggggggcggaggccgagctcgggggggtccctggctgg
tttgggggggtcccgggggtcccctctgagcgggggtcccggggtccccagcggcgcctg
gcgcagtcgccggcggggctgcgggcgctggcccccgggcgggtggtggtggtctgcacc
ccccggcaccgcaacgccctgggcctcatcctccaggtgtccccggaggggtccggccgc
gccttcaccgcgctggtgctgagcgagaagccccccgaggagggggggccggcggggccc
ccccccgacgtccccgacgtcccctaccccgaggacctgctgctcaccaggctcttcgtg
cccgagggcccctgcgggcacgcgctggagaagctgcagcccgaggacatcggggggatc
acggccaagaccctgcgggtgaaccccgaaaagctcctgcaggagctgcgcccgcgccag
ggcccccggcacaggccggagccccccgggacggaggtgggggcggcggtgcaggagctg
gcccggctggcggggggggccccgggggggctccccctgctcgacccggtgggggccctg
cagctgcgggaccccgaggccgtggaagcggccgccgaagcccgggccctggccgcctcg
ctgggctccttccgctgcgtgcacgccccccgcttcccccagcagtacgcccagtttgcc
gcccgggaggagctgctggagcagctggagcatctccagttcctgctgtcggaccagtcg
ctgctgctgctgcccgagtaccaccagcgcgtggccgtgctgcgggcgctggggtacgtg
gcggaggggggggcggtggccctggggggccgcctggcctcgctgctgagcgcccacgag
ctggtgctgacggagctgctgctggggaacgtcctggcccccctgcgccccgaggagagc
gtcgccctgctctcctgcatggtctgccccggccgcggggagccccccccccgcctgccg
ccccccctccagcagggcatggagcaggtgcgggcggtggcccagcgcgtggggcggctg
cagcaggagtgcggcctcagccagagcgtggaggagttcgtggagcagtttggcttcggc
ctcgtcgaggtcgtctacgagtgggcccgcggcatgcccttcgccgacatcgcccggctg
gcggcggtgcaggagggggcggtggttcggtgcatccagcgcctggaggagacctgccgg
gaggtgcgccaggccgcccgcatggtgggagagccggccctggccgccaagatggaggcc
gcctccaacatgatcaagcgcgacatcgtcttcgccgccagcctctacacccaataa
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