KEGG   Mycteria americana (wood stork): 142403421
Entry
142403421         CDS       T11228                                 
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B-like
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
mame  Mycteria americana (wood stork)
Pathway
mame03013  Nucleocytoplasmic transport
mame03015  mRNA surveillance pathway
mame03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mame00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    142403421
  09122 Translation
   03013 Nucleocytoplasmic transport
    142403421
   03015 mRNA surveillance pathway
    142403421
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mame03019]
    142403421
   03041 Spliceosome [BR:mame03041]
    142403421
Enzymes [BR:mame01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     142403421
Messenger RNA biogenesis [BR:mame03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     142403421
Spliceosome [BR:mame03041]
 Complex C
  Other components
   EJC/TREX
    142403421
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    142403421
SSDB
Motif
Pfam: DEAD ResIII CMS1 CDC27
Other DBs
NCBI-GeneID: 142403421
NCBI-ProteinID: XP_075345776
LinkDB
Position
Unknown
AA seq 422 aa
MAENDVDNELLDYEDDEVENAAGGDGAEAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDVITLLPSLPPAPAPARGAAPGPRPPCGRSLGSPPSSRPPSSSSSSSSSSSSSSSL
RPARPPKTARRTAKSPPTRTRASKCLRLSAPPAPPGAPADGGEETAGPRTASARRGAAPR
RGSARPGLLQAPGPAYPFPGAGGEQDSGGRGGGKGAGGTPGPCWGAGGPCRGPWSRVGGR
EL
NT seq 1269 nt   +upstreamnt  +downstreamnt
atggcggagaacgacgtggacaacgagctgctggactatgaggacgacgaggtggagaac
gcggcggggggcgacggggccgaggcgccgcccaagaaggacgtgaagggctcctacgtc
tccatccacagctccggcttccgcgatttcctcctcaaacccgagctgctccgcgccatt
gtcgactgcggcttcgagcacccctccgaagtgcagcacgagtgcatcccgcaggccatc
ctgggcatggacgtgctgtgccaggccaagtccggcatgggcaagacggccgtcttcgtg
ctggccaccctgcagcagctggagcccgtcacggggcaggtgtcggtgctggtgatgtgt
cacacgcgggagctggccttccagatcagcaaggagtacgagaggttctccaagtacatg
cctagcgtgaaggtggcggtgtttttcggggggctgtcgatcaagaaggacgaggaggtg
ctgaagaagaattgcccccacatcgtggtggggaccccgggccgcatcctggccctggcc
cgcaacaagagcctcaacctgaagcacatcaagcacttcatcctggacgagtgcgacaag
atgctcgagcagctcgacatgcgtcgggacgtccaggagattttccgcatgaccccgcac
gaaaagcaggtcatgatgttcagcgccacgctcagcaaggaaatccgccccgtctgccgc
aaattcatgcaagacgtaattacccttctaccttctttgcccccggcgcccgccccggcg
cggggggctgcccccggcccccgccccccctgcggaagatctctcgggtctcccccctcc
agccgccccccttcttcttcctcctcctcctcctcctcctcctcctcctcttcctcgctc
cgtcccgcccgccccccaaaaaccgcccggcggacggcgaagagcccccccacacgcact
cgagcgagtaagtgcctgcggctctcggcccccccggccccccccggcgctccggcagac
ggcggcgaggagacggcgggaccccggacggcctcggcacggcgcggcgcggcccctcgg
cgcggctcggcccggcccggactcctccaggcgcccggacccgcttatccttttcctgga
gccggcggagagcaggattcgggggggcgggggggggggaagggggcggggggcaccccc
gggccgtgctggggtgcaggggggccctgtcgggggccctggagccgtgttgggggcagg
gagctatag

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