Mycteria americana (wood stork): 142404398
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Entry
142404398 CDS
T11228
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mame Mycteria americana (wood stork)
Pathway
mame03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mame00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142404398 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mame03021
]
142404398 (PCF11)
03019 Messenger RNA biogenesis [BR:
mame03019
]
142404398 (PCF11)
Transcription machinery [BR:
mame03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
142404398 (PCF11)
Messenger RNA biogenesis [BR:
mame03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
142404398 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
142404398
NCBI-ProteinID:
XP_075347273
LinkDB
All DBs
Position
1:214710601..214731674
Genome browser
AA seq
1709 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSTIASVPAPSKQHMSPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDIKIVNRDPRLNRM
AQHSSHAKDQSHRKEFPPNTTSQSDTKANKTTQAEKQNSTKQEKLKASEKTQKKELDQSE
AKSKSPSPLKNKLPNTKDTKTQECESTKVSEISKRDPRLKRHLQDKSEGKEEEVKEKRRS
TEKKEKEEHKTCEHRPVGSRNKVINGAVQKQDTTTDESEKQGGKQGRSSSRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSN
KRNVKQEVRDPRRVKKAQEDRPQETASQHSTKASPDPKENAENWQGSKSGKRWKSGWEEN
KNSQQNEEHQALGKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANERLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHLPDALLSGIECEQAKAKRGVQFD
RKEPFGERSRRHSPVSGTNRPFADNLSPLESRRRLEEQNAAKGARGSKNFDPYDSWEESD
EFRDALRQQGKSTTEFQKIDGDAICRFDNREERQLLGQAGVREEPRSPFSERFKRARYED
PEKAPFPESPGSRFGGIEAKQRISALMEDRPLFDGSPRQAAARVGVDGQGSPFVDGPAAG
SSSRIDGPPGQAAMRFEGPLVGAGASQFDGPLAGAGAAGALRFDGPPGQLAGALRFEGPP
GQVGGGGPLRFDGPLGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPAGGLRFE
GPHGQPMGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFE
GPHGQPMGPHGPSGGGLRFEGPHGPSGGGLRLEGPHGPSGVGPRLIDGPVHQGAGGLRFD
GPLGRAGPRFDGCHAAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQAQPRFDTAIPQ
RFDGPHQPASRFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPSHGM
QFQRPDIFDGSPGPNFNGPAGPGAQNFPLRAAGHYFDEKGLQGPQYGNFNNMPMGSNQVS
LMSAQPGPYGQGQQYLPNPGSFVQNPAGALPHSYPDNHLGQLDVNELFAKLLSTGILKLS
KTDSTSAQVNETSSQPAAEEEDDDQNEDQNVPDLTNFTVEELRQRYDSVINRLYTGIQCY
SCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERA
KSQFFEKAHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLK
NAIRVDEKIYHPSCYEDYQNTSSFDCTPSPSKTPAENPLNIMLNIVKQETQESCDSPKVK
EEPDDTPTACAEESTPASTDIKTEPDESV
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggtagcagcgaggcccgggaggacgcgtgccgcgat
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctccctgttatgtaccttatggattccattgtc
aagaatgtgggaagagaatatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcttggccaattaagcctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctactgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaa
ttagagctggagctggaacagactaaagcacagttggctgtatctcttagtgttcagcaa
ggatcatctactatagcttcagttccagcaccttccaagcaacacatgtctcccacacct
catatgacagttaaaccacctcatcagactgctgtgcaatccgaaaaaaacaaaccatcc
ccaagtcctccacttcatgatatcaaaatcgtaaatagggatcctcgacttaataggatg
gctcaacattcttctcatgctaaagatcaatctcatagaaaagaatttccaccgaacacc
accagtcagtctgataccaaggcaaacaaaacaacacaggctgaaaaacaaaactcaaca
aagcaagaaaaattgaaagcaagtgaaaaaacacagaagaaagaacttgaccagtcagaa
gcaaaatctaaatcaccatcccctttaaaaaataagctaccaaatactaaagatactaaa
acccaggaatgtgaaagcacaaaagtatctgaaattagtaagcgggatccaagactgaaa
agacatcttcaagataagtcagagggcaaagaggaggaggtgaaagaaaagaggagaagt
acagagaaaaaagaaaaagaggaacataagacatgtgaacatagaccagtaggcagcaga
aataaagtaattaacggtgctgttcagaaacaagacacgactacagacgagtcagaaaaa
cagggtggaaaacaagggagatcaagtagtagaaaacggtcacgatcgcgctctcctaag
gcacggtcaccatctacacattccccaaaaagacgagagaggagatcacctaaaagaaga
cttaggagtttatctccgacttcatcaactcctaaaattgggaagatacgtcagataggc
cccaagcagtctcatgttgaagaaggcacacaagcagcaagagatgaaagaaattctaat
aagagaaatgttaaacaagaggtgcgagatccgaggagagtgaagaaagcccaagaagac
aggccccaagaaacagcaagccagcattctacaaaagcatctcctgatccgaaggagaat
gcagaaaactggcaaggatccaaatcaggcaagaggtggaaatctggttgggaagaaaat
aaaaattcacagcagaatgaagaacaccaagcacttggtaaatcccctcaccaaagacac
cgggaaaactggcctgctggtaaaggaattctatcaccccgagcaccaaagcagcagcac
cggttaagtgtggatgctaatttacagattcccaaagaattgacatctgcaagcaagaga
gaattacttaagaaggccaatgaacgcttaacatctggtgaaataacacaagatgagttc
cttatggtagctcatcagatccgacagcttttccagtatcaggaaggaaagcacagatgt
aatgtctgggatagccccacggaggaaaaatgtggtttgaaaaagaaacctcttctatcg
gatgcagaattaacgtattatgaacataaggctaaactaaaaagaactcaagttcagcat
tcattgtcaaggcttgatctgttggatcctgatgatattttggattatcatttgcctgat
gcattgctttctggaatagaatgtgagcaagcaaaagccaagcgtggagtacagtttgac
aggaaagaaccatttggagaaagatcaaggagacactctcctgtaagtggcactaataga
ccttttgctgataacctctcaccgcttgagagtcgacgaagacttgaggaacaaaatgct
gctaaaggagcaagaggttctaagaactttgatccttacgacagctgggaagaatcagat
gaatttagagatgctctcaggcaacaggggaaaagcacaacagagttccagaaaatagat
ggtgatgcaatctgcagatttgataatcgtgaagaaagacagcttcttgggcaagctggt
gttcgagaggaaccaagatcaccattcagtgaacgtttcaaaagagctaggtatgaagat
ccagaaaaagcaccatttccggaaagtccaggatcaagatttggaggcattgaagcaaag
cagaggataagcgcactaatggaagacagacctctgtttgatggctcacccagacaggct
gctgcaagggttggggtagatggacaaggaagcccttttgttgatggtcctgccgctggt
tcaagttccagaattgatgggccacctggacaggctgctatgagatttgaggggcctttg
gtgggggcaggtgcgtctcagtttgatggaccactggcaggagcaggggcagctggagcc
ctaagatttgatgggccaccaggacagctggcaggggctctgaggtttgaaggaccccca
ggacaggttggtggaggaggtccactgaggtttgatggacctcttgggcagataggtggg
cctttgcggtttgaggggcctgcagggcagcctgtaggtggtcctagatttgaaggacct
ggagttggtctcaggtttgagggtccccgtggtcagcctgcaggtggtctcaggtttgag
ggacctcatggtcaacctatggggcctcgaggtcaaccagggggtggtctcaggtttgag
ggaccccatggtcagcccttggggcctcatggtcaaccagggggtggcctcaggtttgag
gggccacatttacagccattggggccccatggtcaacctggaggtggcctcagatttgag
gggccacatggtcagcctatggggccacatggaccatcaggtggtgggctcagatttgag
gggccacatggaccatcaggtggtgggctcagattggaaggaccacatggaccatcaggt
gtaggtcctaggttgattgatggaccagtacaccagggagctggtggacttagatttgat
ggtcctctgggtcgggctggtccaagatttgatggttgtcatgcagctggatttgatggt
cagcctggacagctgtctctcttgcaaagatttgatggaattcatggacagcctggtcca
agatttgaaagggcgcctggccaacaggcacaaccacgatttgatacagccatacctcaa
agatttgatggacctcaccagccagcctctagatttgacttgccccttggccttcagggt
gcacgtttcgaaaatgtagctaaccatcctgcctcaagactagaaatgtcaccatatgga
caaggtggtccgtttgttgaacatcccggccagggctacaacggaccatctcatgggatg
cagtttcagaggcctgatatatttgatggttcacctggaccaaatttcaatgggcccgct
ggcccaggagcacagaatttcccattgagagcagctggacattactttgatgaaaaaggt
cttcagggtcctcaatatgggaacttcaataatatgccaatgggaagtaatcaggtttct
ctcatgtctgctcaaccagggccttatggccaaggtcaacagtatttgccaaatcctgga
agttttgttcagaaccctgcaggagcccttccacattcatatcctgataaccaccttgga
cagcttgatgtcaatgaattgtttgctaaactgctgtcaacagggatcctcaaactgtca
aaaactgattccacttcagcacaagtgaatgaaacatcaagccagccagctgctgaagag
gaagatgatgaccagaatgaagatcaaaacgttccagacctcactaacttcacagttgaa
gaacttagacagcgttatgatagtgttataaatcgactgtacactggaattcagtgttac
tcatgtggaatgagattcactacttcacagacagatgtttatgcggatcatttagactgg
cattaccgtcagaaccggacagaaaaagatgttagcagaaaaattacacacagaagatgg
tactacagtttaacagactggattgaatttgaagaaatagccgatctagaggaacgtgca
aaaagccagttttttgaaaaagctcatgaagaggttgtgttgaagacacaagaagctgcg
aaagagaaggaatttcagagtgtccctgctggaccagctggagcggttgagagctgtgaa
atttgccaagagcaatttgaacagtattgggatgaggaagaggaagagtggcacctgaag
aatgctatcagagtagatgaaaagatttaccatccatcttgctatgaagattaccaaaac
acatcatcatttgattgcacaccatctcccagcaagactcctgcagaaaatccactaaat
ataatgttgaacattgttaaacaagaaacacaagagtcctgtgactcgcctaaagtcaaa
gaagaaccagatgacacccctactgcctgtgcagaagagagcacacctgcatctacagat
attaaaacagaacctgatgagtctgtttaa
DBGET
integrated database retrieval system
