Mycteria americana (wood stork): 142408001
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Entry
142408001 CDS
T11228
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
mame Mycteria americana (wood stork)
Pathway
mame04512
ECM-receptor interaction
mame04514
Cell adhesion molecule (CAM) interaction
mame04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mame00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
142408001 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
142408001 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
142408001 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mame04131
]
142408001 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
mame04090
]
142408001 (SDC1)
00535 Proteoglycans [BR:
mame00535
]
142408001 (SDC1)
Membrane trafficking [BR:
mame04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
142408001 (SDC1)
CD molecules [BR:
mame04090
]
Proteins
142408001 (SDC1)
Proteoglycans [BR:
mame00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
142408001 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
142408001
NCBI-ProteinID:
XP_075353978
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All DBs
Position
3:11276087..11302315
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AA seq
309 aa
AA seq
DB search
MINVVAVWLVALCFQAAVPQTTNLNLPPEDLDSSGDDDDAFSGSGAGPLTDQSHTWRIPG
EPTNSSLLATPMDFNEQPFPGIESRTEKELVSPSATSNVVTEEPVVSVKDEVPILGSPDE
KPTNDVVTTTVRSPTTHFPSVVHVTPSEASGTVHELEPKIPSSDVPDTRDVPEPHSTIPH
EGDITATPTTTAPKDVVPTHEEVFEDGSGDPGDFILTKDEDLVPTRNSEVLADSGRNAKA
AGASGIMDRKEVLGGVIAGGLVGLVFAVFLVAFMLYRMKKKDEGSYSLDEPKQSNGGYQK
PHKQEEFYA
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgataaacgtggtggccgtgtggctggtggccctttgcttccaggctgctgtcccgcaa
actacaaatcttaaccttcctcctgaagatcttgattcatctggtgatgatgacgatgcg
ttctcaggttcaggtgcaggtcccctgactgaccagtctcacacctggagaatcccagga
gaaccgactaattcctcattactggcaacaccaatggatttcaacgaacagccatttccc
gggattgagagccgaactgaaaaggaattagtatctccttctgcaactagtaatgtagtg
acagaggagccagttgtatctgtgaaggatgaagtacccatcctgggctcacctgatgag
aaaccaacaaatgatgtggttacaacaacagtcagaagccccactactcactttccttca
gtggttcatgtaactccttcagaagcctcaggcacagtccatgagctcgaacctaaaatc
cctagctctgatgtgccagacactagagacgtgcctgagccccactctaccatccctcat
gagggagacatcactgccacccccacgacgacagctccaaaggatgttgttcctacacat
gaggaggtttttgaagatggctctggagacccgggagacttcattttgactaaagatgag
gatttggtccccacccggaactcagaagtactggctgactctgggaggaatgccaaagca
gcaggagcctcgggaattatggacagaaaagaagttcttggaggtgttattgctggagga
ctagtaggcttggtgtttgcagtgtttctagttgcatttatgctgtacagaatgaagaaa
aaagacgaaggcagctattcactggatgaaccaaaacagtctaacggaggataccaaaaa
ccacacaaacaagaggaattctatgcataa
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