Mycteria americana (wood stork): 142408105
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Entry
142408105 CDS
T11228
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
mame Mycteria americana (wood stork)
Pathway
mame03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mame00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142408105 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mame03000
]
142408105 (CNOT4)
03019 Messenger RNA biogenesis [BR:
mame03019
]
142408105 (CNOT4)
04121 Ubiquitin system [BR:
mame04121
]
142408105 (CNOT4)
Enzymes [BR:
mame01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
142408105 (CNOT4)
Transcription factors [BR:
mame03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
142408105 (CNOT4)
Messenger RNA biogenesis [BR:
mame03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142408105 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
142408105 (CNOT4)
Ubiquitin system [BR:
mame04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
142408105 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
DZR_2
Nup35_RRM_2
zf-CCCH_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
142408105
NCBI-ProteinID:
XP_075354256
LinkDB
All DBs
Position
1:54454680..54545681
Genome browser
AA seq
765 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGTVDKNKNKVTALQRYDTPNSNNKDAWPSLQSSSKSANGLTMEH
RKTPPILENGTDPEHMTPDGADSDFGPIDKPSDSLSIGNGDSSQQITNSDTPSPPPGLTK
PNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSNDWPTAP
EPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDITRKALADLIEKELSVQDQ
PSLSPTSLQNPTPHTTTAKGPGSGFLHPAAPANANSLSSTFPVMPQRFPQFQQHRAVYNS
FSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHSTGLGGIPISDNSSSV
ESLNMKEWQDGLRALLPNININFGGLPNASSPSNANHSVPTSNTATTDSLNWDSPGSWMD
PAIITGIPASTGNSLDTLQDDNPPHWLKSLQALTEVDGPSAAPSQTHHSNPFGTQIPLHR
ASWNPYSPPSNPTSFHSPPPGFQTAFRPPSKNPTDLLQSSALDRH
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagccctgatgctaaggaagaccctgtggaatgccccctctgcatggagcct
ctggaaattgatgacatcaacttcttcccttgcacctgtggctaccaaatctgtcgtttc
tgttggcatcgtatccgcactgatgagaatggactttgtcctgcttgcagaaagccatat
ccagaagatccagcagtgtacaaaccactctcccaggaagagctgcaaaggataaaaaat
gaaaagaaacagaaacaaaatgagaggaaacagaagatatcagaaaatcgcaaacatttg
gccagtgtacgggtcgtacagaagaaccttgtcttcgtggtagggctgtctcagcgccta
gcagatccagaggttttgaaacgaccagaatattttgggaagtttggtaaaatacataaa
gttgtcattaataacagcacatcatatgcaggctcacagggtccaagtgccagtgcatat
gtaacctacatccggtcagaagatgctctcagagccatacagtgcgtcaataatgtggtg
gtagatggcagaacacttaaggcatcattaggtacaacaaaatattgcagttattttcta
aaaaatatgcagtgtccaaaaccagactgcatgtatctacatgagctgggagatgaagca
gccagtttcacaaaagaggaaatgcaggcgggtaagcaccaggaatatgaacagaaacta
ctgcaagaattatacaaactaaaccccaactttctccaattatctacgggtacagttgac
aagaacaagaacaaagtgacagcactgcagaggtatgatacacccaacagtaataacaaa
gatgcctggccatcattacagagttcaagtaaatcagccaacggtttaacaatggaacac
aggaaaacgcctcctatattagaaaatggcacagacccagaacacatgactccagatggt
gcagactcagatttcggccctatcgacaaaccttcagattccctcagtataggaaatggt
gacagctcccagcagataacaaacagtgacacaccttcaccaccgcctggtttaacaaaa
cccaatccagtcatacccatcagttcatctaatcacagtgcacggtctccttttgaaggg
gctgtaacagaatcacagtcgctgttctctgacaactttcggcaccctaaccccatccct
agtgggcttcctccattccccagctctccacagacttcaaatgactggcccacagcacca
gaaccacagagcctcttcacatcagaaactataccagtatcctcctccacagactggcaa
gcggcttttgggtttggttcctccaaacagcaagaggacgacttagggtttgaccccttt
gacatcacccgcaaagccttagcagacctgattgagaaggaactgtcagtccaagaccaa
ccttccctctctcccacatctcttcagaaccctaccccacacactacaactgccaaaggg
ccaggctctggatttctgcatcctgctgcacctgcaaatgccaactctctcagtagcacc
tttcctgtcatgccacagaggttcccacagtttcaacagcatcgagcagtttacaactcc
ttcagttttccaggccaagcagctcgctatccttggatggcgttcccacgcaatagcatc
atgcacttgaaccacacagcaaatcccacctcaaatagtaatttcttggacttgaatctc
ccaccacaacacagcacaggtctgggagggatccctatatcagacaacagcagttctgta
gagagtttaaatatgaaggaatggcaggacgggctaagggcacttctaccgaacattaac
atcaactttggtggactgcccaatgcttcttccccctccaacgccaaccacagtgtacca
acgtccaacactgccaccaccgacagcctgaattgggacagccctggcagctggatggac
cccgcaattatcacaggtatcccagcctccacaggaaacagtttagacacccttcaagat
gacaatcctccacattggctaaaatctcttcaggccctcacagaggtggacggccccagt
gcagcgccatcacagacgcaccacagtaaccccttcggcacacagatccctctgcacaga
gccagttggaatccctactctcctccttcaaaccccaccagcttccattccccaccccca
ggctttcagacagccttcagaccccccagtaaaaaccccacagatctactacagagctca
gcgctggatcgtcattag
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