Mycteria americana (wood stork): 142409949
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Entry
142409949 CDS
T11228
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mame Mycteria americana (wood stork)
Brite
KEGG Orthology (KO) [BR:
mame00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mame03016
]
142409949 (RTCB)
Enzymes [BR:
mame01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
142409949 (RTCB)
Transfer RNA biogenesis [BR:
mame03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
142409949 (RTCB)
Prokaryotic type
tRNA splicing ligases
142409949 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
142409949
NCBI-ProteinID:
XP_075357848
LinkDB
All DBs
Position
1:60816905..60828373
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgccgaacatgcacgtggagggcgttttctacgtgaacgac
ccgctggagaagctgatgttcgaggagctgcgcaacgcctgccgcggcggaggtgcaggt
ggctttttgcctgctatgaaacagattgggaatgtggctgcattacccggcattgttcac
agatcaataggccttccagatgtccattctggctatgggtttgccattggcaacatggct
gcctttgatatgaatgatcctgaagcagtggtttcaccaggtggtgtcggatttgacatc
aactgtggtgtccgcttactgcgtacaaatttggatgaaagtgatgtgcagcctgtgaag
gagcagctcgcccaggctatgtttgaccacattcctgttggtgtcggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggcgctagagatgggtgtggactggtcgctc
cgggaaggctatgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgctg
caggctgaccccaacaaggtctcctcaagagcaaagaagaggggcctgcctcagctgggg
accctgggagccggaaatcattatgccgagatccaggttgtggatgacatttacaacgaa
tatgctgccaggaagatgggcatcgaccacaaagggcaggtgtgcgtgatgatccacagt
ggcagcagaggcctgggccaccaagttgccacagatgcattggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaacgatcgccagctggcgtgtgccaggattgcctct
gcagagggacaggattacttgaagggaatggcagctgctggaaactatgcatgggtcaac
cgctcttctatgacttttctaacaagacaggcctttgccaaagtcttcaacacaacccca
gatgaccttgatatgcatgttatctatgatgtgtctcacaacattgccaaagtggagcaa
catgtagtggatggaaaggagcggactctgctggtgcacagaaagggatcaaccagggcc
ttccctcctcaccatcctcttatcgctgttgattatcaactgactggacagcctgttttg
atcggcgggactatgggcacctgtagctatgttcttactggcacagagcaaggcatgact
gagaccttcggaactacttgccatggagctggtcgtgcgctgtctcgagccaaatctcga
cgtaacttggacttccaggatgtattggacaagctggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttataagaacgtgacagat
gtggttaacacgtgccatgcagctggcattagcaagaaagccattaaactgagacctatt
gctgttataaaaggctag
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