Mycteria americana (wood stork): 142411172
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Entry
142411172 CDS
T11228
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
mame Mycteria americana (wood stork)
Brite
KEGG Orthology (KO) [BR:
mame00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mame03009
]
142411172 (PDCD11)
Ribosome biogenesis [BR:
mame03009
]
Eukaryotic type
90S particles
Other 90S particles
142411172 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_Syf1_CNRKL1_N
OB_RRP5_4th
HAT_PRP39_N
Suf
OB_RRP5
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
ARM_TT21_5th
ARM_TT21
TPR_CcmH_CycH
TPR_16
TPR_12
Motif
Other DBs
NCBI-GeneID:
142411172
NCBI-ProteinID:
XP_075360736
LinkDB
All DBs
Position
6:complement(15128720..15158640)
Genome browser
AA seq
1838 aa
AA seq
DB search
MASMEENFPRGGIQKKPTEGKTPNQKLERDNLFDIHHEEQSQKRKRSQRDQGKQKKFKAD
KIVAAKDNVVNIEPLTIETLCEGMLLLGCIKEVSDYELVISLPNGLSGFVPVTQISDAYS
KMLSKQVAQGELLEDLNSLSDMYSPGTLVRCIVTSVEKSADGRRSIKLSIDPKKVNKGLN
ASALASGMLLSGFVSSVEDHGYLIDIGVSGTHAFLPRQKAQNYIKAVKRGPDLKIGQNLN
CVIVEVKNEGRVVRLSIDRSEVAASLATERQNWTLSNLLPGLVVKARVQKVAPLGIKVSF
LSSFTGIVDFMHMDPEKSMNCSPDQVVKACILSIHPTSKLVRLTLRQAFLHPGGSPNQLS
NDRMGAVVEESTVKAFYKQFGAIFELDDGTLAFARMKHLSKTRKSFKPGAFKTGCKHKCR
IIDYSLMDEMCIVSLKYQIIEARFLQYQDIHTGDVVQGKVFALKPIGMQVKVTDGIKGLV
PSMHLADVILKQPEKKYNIGDEVKCRVLECNPAGKKLILTLKKSLVQSKLPVLSSYEDAK
PGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHEGQVVKVMVLKCE
PQQERLLLSFRLSGKPAPEDKKECMPKKKQEVKYQIGEMVDVKVLKKKDNGLEVSVLEDE
GSVIASIPTVHLSDFVANCKLLWHCLQEGDVLPRVMCLSDKGEHIILSRKSAVISAVQEE
QVVRSFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVTMSDKFVTDTKDHFVVGQ
TVIAKVMSIDEEKQRVLLNLKVSECSSGDSAAESFALLNQYFKEMKEIRNLLRRREEPSM
ARGLCELVPGKELQLVVQGVKEDGSALFSGSYVTGLTVTATRYHLGDKNIVPGEKTKALV
LHVDALTSKVYVSLREELLKQRAKQRLTENSQHSAVVQHIAEEFAIVSLLETGQLAAIPI
ASHFNDTFRFDSEKLKVGQTITATLKVVKVNDHGVLLAVQGPAKKNVFVRVRNESETVLE
EMLAAVKHSLSLGDIVTGTVKSVKPTHVTVAIDDKLTGSIHASRILDEVPIGSFPTYTLK
TGQKVTARVIGGRDVNTHRYLPITHPHFTQSIPELSIRPSEIEGKVTAMLNLKEDSALKK
LGLYNVGQTVTCFVKKYNILKNWLEVEVTPDIRGRVPHLLLSLNTRVLKHPEKSFKNGQA
ISATVTGTDVTERNLCLSLTGIQSLEQGTITVGMVTKVTPHIGLTIALPGGKTGKVSVFH
LNDTYMENPLGDFKVGKIVRCYILSNENGKIQLSLRQSRLNPKSNSKVEDVEITCIKDVK
KGQLVRGYVKSITPSGVFFGLSTSLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVL
GVNGKEKHIELSLLPEDTGMPSVLPESLGLPRYDAEEEKREADDREKREELKLKTKRRRG
NSESEQETKPKKRKICSADENDSGIEVYYREEEEDDQEEEEAKKKSKIRKPGEAPRLQVS
VGFTWDEDMNAMDIPVLNQKEESSESEEEEDLQSKLKKQTKKEKELEKQKKEKELCKLEA
ALMDPSRQPQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFRE
EQEKLNVWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYANSEKYKQAEEL
YHTMLKRFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQLEFR
FGDPEHAKALFESTLNSYPKRTDIWSIYMDIMIKHGSQKEVRDIFERVIHLSLAPKKMKF
FFKRYLDYEKKFGTTESVLAVKRAALEYVETKSSLADT
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatggaagaaaactttcctcgagggggcatccagaaaaaacccacagaggga
aaaacccccaaccaaaagttagagcgggacaatttgtttgatattcaccatgaagaacaa
tcccagaaaagaaaaaggagccaaagggatcaaggaaagcagaaaaagttcaaggcagac
aaaatagttgctgctaaagacaatgttgtgaatattgaaccactcacaattgagacgctc
tgtgaggggatgctgctccttggttgtataaaagaggtcagtgactacgagctagtcatc
agcttgcccaatggactttcaggatttgtgccagtcacgcagatcagcgatgcctacagc
aaaatgctgagcaagcaggtggcccaaggagaactcctggaggacttgaattcgctctcg
gacatgtattctccagggacactggtcaggtgcattgtaaccagtgttgagaaaagtgct
gacggacgtcggagtatcaaattatcgatcgaccccaagaaggtcaataagggtctgaat
gcttcagcactagcatcgggcatgctgctctctggctttgtgtctagtgtggaagaccat
ggttacctcattgatattggagtcagtgggactcatgcttttctgcctcgtcagaaagcc
caaaattacatcaaagcagtcaagagagggcctgacttgaaaataggccagaacctgaac
tgtgtcattgtggaagtaaagaacgagggaagagtggtccgtttgtccattgatcgatca
gaggttgctgcatcccttgcaacagagcgacagaactggaccctctctaatttattacca
gggctggtggtgaaggctcgagtgcagaaggtggccccactcgggatcaaagtgagcttt
ctgtcttccttcactggcattgtggatttcatgcacatggacccagagaaatccatgaac
tgttctccagatcaagtggtgaaagcttgcatcctctctatccaccccacctccaagttg
gtgcggcttactctacggcaggccttcctccaccctgggggatccccgaaccagctctcc
aatgatcgcatgggggcagtggtggaagagtcgacagtgaaagctttctacaagcagttt
ggtgccatctttgagctcgatgatggcactcttgcatttgcacggatgaaacatctttca
aaaaccagaaaatcctttaaacctggggcatttaagacaggatgcaaacataaatgtcgg
atcattgactacagcctgatggatgagatgtgtattgtatctctgaagtatcagattatt
gaagcacggtttctgcaataccaagatatccacacaggggatgtggtgcagggcaaagtg
tttgccttgaaacccattgggatgcaagtgaaagtgactgatgggattaaagggctcgtg
ccgtccatgcatcttgctgatgtgatcctgaagcagcctgagaagaagtacaacatagga
gatgaagtcaaatgtcgggtgctagagtgcaatcctgcaggaaagaagctgatccttact
ctaaagaaaagtctcgtccaatcaaagcttccagtcctctccagttatgaagatgcaaaa
ccaggtctgatcacacatggctttgtggtgtgtgcaagggagtttggctgtattgtgaag
ttctacaatgatgtcaaaggtctggtacccaagaatgagctgagctcagaacccatatct
tgtccagataaagtcttccatgaaggccaggttgttaaagtaatggtcttaaaatgtgag
ccccagcaggaaagactcctgttgtccttcaggttatcaggcaagcctgccccagaggac
aaaaaggaatgtatgccaaagaagaaacaggaagtgaaataccaaataggagagatggtt
gatgtgaaagtcttgaagaagaaagataatgggctagaggtttctgtcttagaagatgaa
ggcagtgtgatagcctcgattcccacagttcacctctctgactttgttgctaattgcaag
ctcctgtggcattgtcttcaagagggagatgtcctgcccagagttatgtgcctaagtgac
aagggagagcatatcatcttaagcagaaagtctgcagtgatttctgctgtacaggaggag
caagttgtgagaagtttctctgaaatccagcctgggatgctgttgactggttatgtgaga
aatgtgatgccctttggagtgtttgtggagttcccttttggtgtgacaggactggcgccc
aaagtgaccatgagtgacaagtttgtgacggacaccaaggaccactttgtggtgggacag
actgtgattgcgaaggtgatgagcattgatgaggagaagcagcgtgtgctcctcaatctg
aaggtgtcagagtgcagctcaggcgattctgctgcagagagctttgccctgctgaatcaa
tatttcaaggagatgaaagaaatcaggaacttattgaggagaagagaggagcccagcatg
gcccgaggcctttgtgagttggtgcctgggaaggagctgcagctggtcgtgcagggtgtg
aaggaggatggctcagcgctgttcagtggcagctatgtcacaggcttgactgtgacagcc
actcgataccatttgggagataaaaatattgttcctggtgagaaaacaaaggcattggtt
cttcacgtggatgccctcacatccaaagtgtatgtttctcttcgggaagaactgttaaaa
caaagagccaagcaacggctcacagagaattcccagcactctgccgtcgtgcagcacata
gcagaagagtttgccatcgtgtctttgttggaaacaggccagctggcagctatccccata
gcctctcacttcaatgacaccttccgctttgactcagaaaaactgaaggtgggacaaaca
atcactgcaaccttaaaagtagtgaaggtgaatgaccacggagtcttgttagccgtacaa
ggcccagcaaagaagaatgtttttgtaagggtccggaatgaatctgagacagtgttagaa
gagatgcttgctgctgtgaaacactcgctttccctgggggatattgttactggtactgtt
aaatctgtcaaaccaacccacgtcacagttgctattgatgacaagctgacaggttcaatc
catgcatcccgaattctggatgaagtgcccataggctcttttccaacgtatactctgaaa
actggacagaaggtgactgcccgagtcattggaggcagagatgtgaatactcacaggtac
ctgcccatcacccatccacacttcacacagtccattccagagctcagcattcgaccaagt
gaaatagaagggaaagtcacagcaatgctgaaccttaaagaagatagtgccctcaagaaa
cttggactctacaacgttggacagacagttacctgttttgtgaaaaagtataacatcctc
aaaaattggctggaggtagaagtcacccctgacattcgaggaagagttcctcatctgctg
ctgtctctgaacaccagggtcttaaaacatccagaaaagagcttcaaaaatggccaggca
atatcagctacagtgactggaacagatgtcactgaaagaaacctctgcttgtcactcaca
ggaattcagtcactggagcagggtaccatcactgtaggcatggtaacaaaggtgactcca
cacattggtttgaccattgcgctgccaggtgggaagactggcaaagtcagcgtctttcac
ctgaatgatacttacatggagaatcctctgggtgacttcaaagttggcaagattgtcagg
tgttacatcctctccaatgagaatggcaaaatccagttatctctccggcaatcccggcta
aacccaaagagcaacagcaaagtggaggatgttgaaataacatgtattaaggatgttaaa
aaaggccagctagtgagaggctatgtcaaatcaatcactccatcaggtgtattctttggc
ttgtccacttctcttttgggccgaatcctgttccagaatgtttccccttactttgtacag
aaacactccttatatgaaaagtacctgcctgaaggaaagctgctcactgccaaggtgctt
ggtgtaaatggaaaagaaaaacatattgagctctctctcctgcccgaggacactgggatg
ccaagcgtcttgcctgaatccttaggcctaccacgatatgatgcagaggaagaaaaaaga
gaggcagatgacagggaaaagagggaagagcttaagctgaagacaaaacggagaagagga
aactctgaaagtgagcaggagactaagccgaaaaagaggaagatctgctcagcagatgaa
aatgacagtggaattgaggtatattaccgggaggaggaggaggatgaccaggaggaagag
gaagctaaaaagaaatctaagataaggaaaccgggtgaagctcccaggttgcaagtatcc
gtgggcttcacctgggatgaagacatgaatgcaatggatatacctgtgctgaatcagaaa
gaagagagctcagagagcgaggaggaggaggatctgcagtcaaagctgaagaaacaaaca
aagaaagagaaggagctagagaagcagaaaaaggagaaggagctctgcaaattagaggca
gccctgatggaccccagtcgacagccccagtcagcagatgactttgaccgcctggtgctg
agcagtcccaacagctccatcctctggctacagtacatggctttccacctccaggctact
gagattgagaaggccagagctgtggcagagagagcgcttaaaacaatctgcttcagggaa
gaacaggagaagctgaatgtctgggtagctctgctgaacttggagaacatgtatggtact
gaggagacactgatgaaggtctttgagagagctgttcaatacaatgaacctttgaaagtc
ttccagcatctgtgtgacatctatgccaattctgagaagtacaagcaagcagaagaattg
taccacacaatgttgaagcgtttccgtcaggagaaatctgtgtggctgaaatacgcctct
ttcctcctgaagcaaggccagactgaggctacacacaggcttttggagcgtgctctcaag
gctttgcccaccaaagaacatgtggatgtaatttcaagatttgcacagctggagttccgt
tttggggacccagaacatgccaaggccctctttgagagcaccctcaacagctatcccaag
cggacagacatctggtccatctacatggatatcatgatcaaacatggcagccagaaggaa
gtacgggacatctttgagagggtcatacacctgagcttggcaccaaagaagatgaaattc
ttctttaaacgctatctggattatgagaagaaatttggtacaacagaaagtgtcctggct
gttaaaagagcagcacttgagtatgtggagaccaagagttcccttgctgacacctaa
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