Mycteria americana (wood stork): 142412317
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Entry
142412317 CDS
T11228
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
mame Mycteria americana (wood stork)
Pathway
mame04382
Cornified envelope formation
mame04510
Focal adhesion
mame04512
ECM-receptor interaction
mame04518
Integrin signaling
mame04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mame00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
142412317 (COL4A4)
04518 Integrin signaling
142412317 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
142412317 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
142412317 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
142412317 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mame04147
]
142412317 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
mame00536
]
142412317 (COL4A4)
Exosome [BR:
mame04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
142412317 (COL4A4)
Glycosaminoglycan binding proteins [BR:
mame00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
142412317 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
142412317
NCBI-ProteinID:
XP_075363425
LinkDB
All DBs
Position
7:19676695..19747248
Genome browser
AA seq
1681 aa
AA seq
DB search
MALTKDLFERIKWLITAAWWLLIVFSAQEIDGGGYAYIEPCGGQDCSICRCFPEKGSRGQ
PGELGAQGPIGSLGSTGPAGLPGEKGQRGENGQPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGSEGPRGKHGLDGCNGSRGDPGFPGENGYIGPRGPYGNPGQKGEKGNSAYVSHFGKGPP
GDRGDPGPPGMPGPRGSRGTTGPSGYPGQPGLPGIPGYPGLPGEQGNPGIGVDGQKGEPG
DVGLPGPPGSPLLVGPPGAQLFKGEKGQKGLPGSTGYRGPRGPKGILGRGEKGEKGIPGF
PGLQGNPGSYGPAGFPGMKGETGFAGFPGQPGYPGIQGDPGEKGPPGPPGAVGTPLLPIK
GPQGDPGFPGPAGDMGSVGPIGPAGLLGRPGDDGTSLPGLPGVSGAPGPQGFQGDPGFPE
TGESIPGRPGFPGPPGLPGQPGRQGLPGLPSVICTDRGIPGEPGAKGQIGLPGRKGEKGE
KGNQGLCSCRAGPPGPRGMQGPPGTQGKKGQMGYPGRHGEKGDPGVSGAMGSPGLPGTPG
SAGQHGEKGEKGDPGRIRIKGVKGERGPTGVPGFPGQRGNDGRDGELGLPGEKGAEGDSG
VPLPGDKGFPGVPGLPGVKGQMGLPGLGFPGPPGVRGSPGDFGDTGNVGPPGPKGQKGET
VCITLPYPGNPGPPGFKGVQGPKGLKGLPGYPGPNGFDGQKGHRGRPGAGIPGPEGFRGK
AGDPGDEGERGSTVDGKNGPPGPPGIDGQKGVPGDTTYGPPGIPGNRGLPGPPGAQGARG
DPGIPGLRGQPGSPGRPGAKGFRGPEGDIGAPGCPGFPGPPCDTGLPGPPGLRGVMGLPG
PQGLPGFKGQRGNRGLAGPPGIKGLKGSPGSRGPPGPPGSRGLPGLPGNKGPPGFPGQTG
SKGIQGPQGFPGLPGTQGPLGISGVKGEEGKMGPPGPSGECGDMGIKGERGPPGDSGCIN
IRLEKGQKGEPGFPGENGFRGERGEKGNTGFRGTPGFPGKSGVPGLPGDHGDTGLMGFPG
SQGFPGPKGFKGIIGFQGQPGDQGNIGLPGIPGNPGLTGPKGSKGKRGDPTPLLGTHGRK
GPPGDPGLPGLCGFPGEKGSPGIQGQPGRPGSKGDPGYPGIPGFPGATGPQGLPGEPGEK
GKHGILGPPGLQGLPGSQGRKGLPGLPGLDGLDGLKGQKGSAGAPGQSETGPPGYSGELG
PKGDRGEPGWPGISIPGPPGERGFPGFPGRRGPVGPTGPMGRSPDSASPGPPGDQGPPGL
DGIRGQPGNSGPPGETIFVRGDPGDTGIRGAPGNPGQRGQQGARGLPGNQGRKGPKGPMG
IRGPQGPPGAIGQPGDQGFQGKPGPRGPTGFIGDPGEPGKIDDSCPAIPGPPGEAGQRGD
DGSVGLPGPIGHPGPQGRKGEEGSCGLPGQDGLPGAPGPPGDQGIIGEQGYAGPQGPPGQ
TGIPGPPGPHIRTASGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGL
PGSCLPVFNTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPMTPLSEEEIQPYISRCAVC
EAPAQAVAVHSQDQSIPPCPVNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQRGTCQFFANEYSFWLTTVMPELQFASAPLSGTLKEGQEQRKKISRCQVCLKH
G
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcattaacaaaggatttgtttgaacggattaagtggcttatcacagctgcctggtgg
ctgctgattgttttttcagcacaagaaattgacgggggaggatatgcatatattgagcca
tgtgggggacaggactgttcgatttgtcggtgctttccagaaaaaggatcaagaggtcag
cctggtgagctgggagctcaaggtccaattgggtccttgggatctacaggaccagctggt
ctgccaggggaaaaaggacagagaggtgagaatgggcagcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccaggatttcctggtttagatggtgttcctggatta
ccaggaagtgaaggacccaggggcaagcatggtttagatggctgcaatggctcaagagga
gatccaggatttccaggcgaaaatggttatattggaccaagaggtccatatggaaatcca
gggcaaaaaggagaaaaaggaaattcagcatatgtttcacattttggaaaaggacctcca
ggagaccgaggtgatcctggaccccccggcatgcccggacctagagggtcaagaggtaca
acagggccatctggatacccaggccaaccaggcttgcctggtattccaggttaccctggc
ttgccaggtgaacagggaaatccaggtattggagtggatggacaaaagggggagccgggt
gacgttggacttcctgggccacctgggtcaccactgttagttggacctcctggagctcag
ctgttcaaaggagaaaagggccaaaaaggactacctgggtcaacaggatacagagggcca
cgtggacccaaaggtatacttgggagaggagaaaagggtgaaaaaggcattcctggattc
cctggattgcagggtaatcctggttcttatggacctgcaggttttcctggaatgaagggg
gaaacaggatttgctggttttccgggacaacctggctatccaggcatacagggggatcca
ggagaaaaagggcccccaggtcctcctggagctgttggaactccgctgcttcctataaaa
ggtccacaaggagatcctggatttccaggtcctgctggtgatatggggtcagttggacca
attggtcctgcaggcctgctaggaagaccaggagatgatggaacaagtttgcctggcctg
ccaggagtaagtggggcaccaggacctcaaggttttcaaggtgaccctggtttccctgaa
acaggtgaatcaatcccaggaagacctggatttcctggaccaccaggcctaccgggacag
ccaggaagacaaggcttacctggactacccagtgtaatctgtactgacagagggatccct
ggagaacctggagcaaaaggtcagataggccttccgggaagaaaaggtgaaaaaggagaa
aagggaaatcaaggcctctgctcatgtagggctggtcctcctggtccccgtggtatgcaa
ggacctccaggtactcaaggaaagaaaggacaaatgggataccctggaagacatggagaa
aagggcgacccaggcgtatctggtgcaatgggatcaccagggctccctgggacacctggt
tccgctggacaacatggtgaaaaaggagagaagggtgatccaggaagaattagaataaaa
ggagtaaaaggtgaaagaggtcctactggggttccaggatttccaggccaaagaggtaat
gatggcagagatggggaactaggattgcctggggaaaaaggagctgagggcgattctgga
gtaccactgccaggtgataaaggattccctggggtcccaggacttcctggggtaaaagga
cagatgggattgcctggtttggggtttcctggccctccaggagtcagaggtagccctgga
gactttggtgatactggtaatgttgggccacctggtccaaagggccagaaaggtgagact
gtctgcattacattaccataccctggaaatccaggtcccccaggttttaaaggtgttcaa
ggaccaaagggtttaaaaggactccccggttatcctggaccaaatggctttgatgggcaa
aaaggccatcgaggcaggccaggagcaggaatccctgggccagaaggctttcgaggcaaa
gccggtgatcctggtgatgaaggtgaaagaggatctacagttgatggtaaaaatggccct
ccaggtccacctggcatagatggtcagaagggtgttccaggtgataccacatatggtcct
ccaggaatcccaggcaacaggggactgccaggaccccctggtgcacaaggagcaaggggt
gatccaggcattcctgggcttcgaggacagcctggtagcccaggacgtccaggtgccaaa
ggttttagaggcccagaaggtgatataggagcaccaggctgtccaggcttccctggtcca
ccatgtgacacgggcttaccagggccaccaggactcagaggtgtcatgggcctgccagga
cctcaaggcttaccaggctttaaaggtcagaggggaaacaggggcctagctgggccacct
ggaatcaaaggtctcaaaggctctcctggctcacgaggtcccccaggtcctccaggctcc
cgaggacttccaggccttccaggcaataaaggaccaccaggtttcccaggacaaacagga
agcaaagggattcaaggaccccaaggattcccaggactcccaggaacacaaggcccactg
ggaatctccggtgtaaaaggtgaagaaggaaaaatgggtccacctgggcctagtggagaa
tgtggggatatgggaataaaaggtgaaagagggcctccaggagacagtggctgtattaac
atccgtcttgagaaaggacaaaagggggaaccagggtttcctggtgagaatggatttaga
ggtgaaagaggtgaaaaaggcaatactggtttcagaggcaccccaggatttccagggaag
agtggtgtcccaggactgccaggtgaccatggtgacactggactgatggggtttccagga
tcacagggtttcccaggaccaaagggctttaaaggaattataggttttcaaggacaacca
ggtgaccagggtaacattggcttaccaggaatccctggaaatccaggactgactggccca
aaaggatctaaaggcaagagaggtgacccaactcctctgcttggtacacatggtcgaaaa
gggcctcccggagatccaggattaccaggactctgtggattcccaggagagaagggttca
ccaggtatccaagggcaacctggaagacccggatccaagggtgaccctggatacccagga
atacctggatttccaggagctacaggtcctcagggattgccaggagaacctggagaaaaa
gggaaacatggaattttgggacctccaggattgcaaggattacctggatcccaaggcaga
aaaggtcttcctggactgcccggactggatggcttggatggactaaaaggtcaaaaaggt
tctgcaggagctccaggtcaaagtgaaacaggacccccaggatactcaggagaacttgga
ccaaaaggagacagaggtgaacctggatggcctggtatttctattccaggcccccctgga
gaaaggggattcccaggattcccaggtagaagaggacctgttggacccactggacctatg
ggaagatctcctgatagtgcttctcctggtcctccaggtgatcaaggaccacctgggtta
gatggcatcagaggtcagcctgggaattctggtcctcctggagagactatctttgtgcga
ggagatccaggtgatactggtattcgaggggcaccaggtaatcctgggcagcgagggcaa
caaggagccagaggtcttccagggaaccaaggaagaaaaggcccaaagggacctatggga
atccgtggcccacagggcccacctggtgctataggacaaccaggagaccaaggttttcaa
ggaaaacctggtcccagaggtcccacaggtttcataggtgaccctggtgaaccaggaaaa
atagatgattcatgccctgcaatcccagggcctcctggggaagcagggcaaagaggagat
gatggctctgtaggattaccagggccaataggccaccctggaccccaaggaagaaaaggt
gaagaagggtcatgtggcctgccaggtcaagatggcttacctggagcacctggaccacca
ggtgaccaagggattataggagagcaaggatacgctgggccacaaggtccacctggccag
actggtatcccaggaccaccaggcccccatattagaactgcaagtggattcttgcttgtc
cttcacagtcagtcagacagagaaccactctgtccacaggggatgccaaaattatggact
ggctatagtctgctgtacctggaaggacaagagaaagctcataatcaagatcttggtctg
ccaggatcttgtcttcctgtgtttaataccatgccctttgcctactgtaatatcaaccaa
gtttgttactatgccagtcgaaatgataagtcttactggttgtcaagtgctgctccttta
ccaatgacgccactctctgaagaagaaatacagccatatataagcagatgtgctgtatgt
gaggccccagcccaagcggtagcagttcacagccaagatcagtcaattcctccctgccca
gtgaactggaggagtctttggataggatattcttttttgatgcacactggatctggtgat
cagggtggtggacagtcccttatgtcacctggaagttgcctagaagacttcagatcagca
ccattcattgaatgccagggtcagcggggaacatgtcaattttttgctaatgaatacagt
ttctggctaacaaccgtgatgcccgaattgcagtttgcatcagcccccctgtcaggaact
cttaaagagggacaagagcagaggaaaaaaatcagtaggtgccaggtatgcctgaagcat
ggctaa
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