Mycteria americana (wood stork): 142414282
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Entry
142414282 CDS
T11228
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
mame Mycteria americana (wood stork)
Pathway
mame03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mame00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142414282 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mame03041
]
142414282 (PRPF40A)
Spliceosome [BR:
mame03041
]
Complex A
U1 snRNP components
U1 related factors
142414282 (PRPF40A)
Complex B
142414282 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
142414282
NCBI-ProteinID:
XP_075367413
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All DBs
Position
9:complement(42912458..42939981)
Genome browser
AA seq
1028 aa
AA seq
DB search
MSGGDSAAAAATASPQPLPFSLPKPPPLMQLTPGDAVRPVASAADQSPKSTRLAGRPDWP
AGKPVSLLAPLLPPRGEPEPLMPFGPSSRQPLRGRLLGRCSGGSLLSPSMRPGGVDRGSL
MMGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGMM
MSHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQSSVLFRPQTTHPVVCAAQQTATTNSSVN
EEHSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGK
PYYYNSQTKESRWAKPKELEDLEAMIKAEENSTKPEESTPATSAPAAAAEATNTTTTATT
AAETAAAVTTTTATSAATAAPEAESAAASSVAENESTGTATAEEQGQATSAPAVQDQSGE
TAANAADDSSKQEASADAASKKEDDDAQPVKKTYTWNTKEEAKQAFKELLKEKRVPSNAS
WEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENH
EKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEAL
KNILDNMANVTYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEE
EKQKSLLRERRRQRKNRESFQLFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPV
FSSGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRAT
TLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDI
RDRFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRS
GSESEDDDSHSKKKRQRSESRSVSERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDI
EREKDKKERERESEKDRARQRSESKHKSPTKKRPGKDSGNWDTSGSELSEGELEKQRRTL
LEQLDEDQ
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtggggactcggcggcggcggcggcgaccgcctccccgcagccgctcccgttc
tccttgccgaagccccctcccctcatgcagctgacgccgggggacgctgtccgccccgtc
gcctccgccgcggaccaatcgccgaagagcacccgactggcgggccgcccggattggccg
gccgggaagccagtcagcctgctggccccgctgctcccgccccgcggggagcccgagccg
ctcatgccctttggcccctcgtcgcggcagccactcagagggcggcttcttggcaggtgc
agcgggggcagcctgctgagcccctcgatgcggcccggcggcgtcgaccgcggctccctc
atgatgggacacccaggcatgccgcattatcctcccatgggaatgcaccctatgggtcag
agaccaccaaatatgccgccggttccgcatggtatgatgcctcagatgatgccccccatg
ggaggaccaccgatggggcagatgcctggaatgatgcagtcagtgatgcctggaatgatg
atgtctcacatgtctcaagctgctatgcagcctacagttccgccaggggtgaacagtatg
gatgcgcaagtaggcgtaacacctcctggaactcagagctctgttttgtttcgccctcag
acaacgcatcccgtagtttgtgcagcccagcaaactgccacaaccaacagttctgttaat
gaagagcactctaaacagaaatctacgtggacagaacacaagtcacctgatggaagaaca
tattactataatactgaaacaaagcagtctacatgggagaagcccgatgatctcaaaaca
cctgctgagcaattgttgtctaagtgtccctggaaagagtataaatctgattctggaaag
ccctactattataattcccaaacaaaggaatcgcgctgggcaaaacccaaagagcttgag
gatctcgaagcaatgattaaagctgaagaaaacagcacaaagcctgaagaatcaactcca
gcaacatctgctccagctgctgcagcagaagcaacaaacacaaccaccacagccactact
gctgctgaaactgccgcagctgttactaccaccactgctacttctgcagcaacagcagcc
cccgaagcagaatctgctgcagcttcttctgtggcagaaaatgagagtactggcacagcc
acagctgaggaacagggacaagcaacttctgcacctgctgtgcaggaccagagtggagaa
actgcagctaacgcagcagacgactcctccaagcaggaggcttcagcagatgctgcttca
aagaaagaggacgacgatgcccaaccggttaaaaaaacctatacgtggaatacaaaggaa
gaagcaaagcaagcatttaaagaactgttaaaagaaaagcgagtaccatccaatgcttct
tgggagcaagctatgaaaatgatcattaatgatcctagatacagtgctttggcaaaatta
agtgaaaaaaagcaagcctttaatgcttacaaagttcaaacagaaaaagaagagaaagaa
gaagcaaggtcaaaatataaagaagctaaagaatccttccagcgttttcttgaaaaccat
gaaaagatgacatccacaacaagatacaaaaaagctgaacaaatgtttggggagatggaa
gtctggaatgcgatatctgagcgtgatcgtcttgaaatttatgaagatgtgttgtttttt
ctgtctaagaaagagaaggaacaagccaaacagttacgaaagaggaattgggaagcttta
aagaacatactagataacatggctaatgtcacttactgtactacttggtcggaggctcag
cagtacctgatggacaatcctacatttgcagaagatgaggaacttcagaacatggataag
gaggatgcactcatctgttttgaggaacatatcagggcattggaaaaagaggaggaagaa
gaaaaacagaaaagtttgcttagagaaagaaggcggcagcgtaaaaacagagaatctttc
cagctatttttagatgaactgcatgagcatggacaattacattcaatgtcctcttggatg
gagttgtacccaaccataagctctgacatcagattcactaatatgcttggtcagcctgtt
ttttcatcaggatcaacagcacttgatcttttcaagttctatgttgaagacttgaaagca
cgttaccatgatgaaaagaagataataaaagatatcttaaaggataaaggatttgtggtt
gaagtgaatacttcttttgaagattttgttacggtcatcagttcaactaaaagagctact
actttagatgcaggaaatatcaagctggctttcaacagtctgctagaaaaggcagaagcc
cgtgaaagagagagggaaaaagaagaagctcgcaaaatgaagcggaaagagtctgccttc
aagagtatgttgaagcaagctactcctccaattgaactggacgctgtctgggaggatatc
agagatagatttgtgaaggaaccagcatttgaagacatcactctggagtctgaaagaaaa
agaatatttaaagatttcatgcatgtactagagcacgagtgtcagcatcatcattcaaag
aacaagaaacattctaaaaagtctaaaaaacatcacaggaagcgatcacgttctcgttcg
ggctcggagtccgaggatgatgacagccattcaaagaagaaaaggcagcgttcagaatct
agatcagtttctgagcgttcttccagtgcagaatctgagagaagttacaagaagtcaaaa
aaacacaagaaaaagagcaagaagagaagacataagtctgattcaccagaatcggatatt
gaacgagaaaaagacaaaaaagagagagagagagagagcgaaaaggatagagctagacaa
agatctgaatcaaaacataaatctcctactaagaaacgacctggaaaagattctgggaac
tgggatacttctggcagtgaactgagtgaaggggagttggaaaaacagaggaggactctt
ttggaacaactggatgaagatcaatga
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