Mycteria americana (wood stork): 142416866
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Entry
142416866 CDS
T11228
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
mame Mycteria americana (wood stork)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_2
FN3_Tor_3rd
CBM_4_9
DUF4998
Motif
Other DBs
NCBI-GeneID:
142416866
NCBI-ProteinID:
XP_075373068
LinkDB
All DBs
Position
14:15964738..16021031
Genome browser
AA seq
1725 aa
AA seq
DB search
MLIHTCFFFACLPVASHVWGRAGQGSGRLKLTVLSEDRLQMKWKETEGNINGYKVRVKPM
AGDSEQEVMLKTKTPKATVGGLSPTKEYTLQVYVLNGSQEALFAKRKFVIEELKNASQTR
NNRRNSGAASGKNLTSLGTSAAEHREVAEATPPPLNAVLTQPAKDRAEKKRQKGTQPKGS
GETTRNQPSAEASATEATPTTTRSSQRAPANSERESPGKEKPTKDSLRRGSQFQCDTSAM
TDIVLLVDGSWSIGRNNFKLIKEFLSNLISPFSIAQDKIRVGLSQYSSDPRTEWDLSAYS
TRDQVLEAVRSLRYKGGNTFTGLALTHVLEQNLKPDAGARLEAEKLVILLTDGKSQDDAN
LAAQTLKNLGIEIFAIGVKNADEAELKQVASEPLELTVYNVLDFPLLSSLVGRLTRVLCT
RIKEKSNKENAGSTVKDIPVNTGPQLSPTDLKISAVTSKSMHLTWSPPLRPPKKYRIVYY
PSKGGIPKEVVLDGAVSSLRLSNLTSHTEYLVSVFPIYDTVVGDGLRGVTSTLPLPSPRS
LRISELSHNSIRLSWKAAQGATQYLVLCSAAPSGAEDYTTEVKVAQPEVLLDGLLPSTEY
SVAVYAMYGEDASDPASIQETTLALSPPRYLSFSELSHASVRVSWEAASPAVKAHRVTYV
SSRGSNTGEVDVPGTATSTVLRPLSSLTQYFISVRSTYDEGDSFPITGNVTTLKVPPPQA
LKVTELSGNSLRLQWEAVAASDVVVYQIKWSTVGGEKPQELSVAGNVATAVLPGLQKNTD
YKISIWAYYKDGARSDTVSVQHRTNSRSPPTNLFIDSETPTSFQVHWTPPDGRIQHYKIT
YNPVSDAAAQQTIMASGKSSSVTLQSLLPDRAYKVIVSAIHYTGESESTSTTGRTAPVLS
KFPSIRGFVPSKTEACPTISSSEGSVRGFDMMEAFGLVEKEYASIKGVAMEPFVFSGSRT
FTLFRDTQLTQRTSDVHLFAIPPEHTISILLRLLPETPKEPFAVWQITDEDFQPLLGVNL
DPGKKSLTYFNHDYKADLQEVSFDQQEVKKIFYGSFHKVHVAVSHFKIKLYLDCKKIAEK
PINTVGSISTAGFIMLGKVTRTRGPRSGSASFQLQSLQIMCSSVGAEDDRCCDLPALRDE
ETCPTLAPACSCTSGRPGLPGPPGPPGSPGRRGPQGEQGEPGPKGEPGPPGQVGPEGPSG
QQGSPGSQGITVQGPVGPPGIKGEKGDTGSPGMQGIPGVQGAPGRDGLQGAKGVRGLEGT
AGPPGPPGPRGFQGVAGSRGSSGEKGPPGDVGPTGLPGPKGERGEKGEPQSLATIFQLVS
QACERMIQTHVLKFDSFIHEHAKKPVPVWEERLKPGEPGPPGPPGPPGSNGERGENGIPG
QPGKDGYPGERGAPGPKGEKGMPGASEEGIQGPRGRTGPPGEVVLGKPGPKGYPGNAGPQ
GSPGVRGQPGQSGYPGGCDISGCYGAGRRAKRKDFSGWRNTAALKVEAQGGSGDPAQPKL
QFPPLSCSWAREKEEEEVALNSHHGHGCSLAIRCPWPSNAQAQLFMELAQATYVFVSHTD
FKHLAGSVNTELRGAEEKLGEAQSPSAASLAFESCSHSRSWGKPVFLDYVCLSLHAVGLS
CLEEFLQPFQSVHLYQLTTDHILHRGWFVDAKPLYVLLEGTSSCSYIAEYMPMNATMLCT
DFNKNFSPKLDGGDENGLAKRCNLRKYSQRALEQLNRGHAVNYNP
NT seq
5178 nt
NT seq
+upstream
nt +downstream
nt
atgctgattcacacttgtttcttttttgcctgcctgcctgtggcgagccatgtctgggga
cgagcgggccaagggtcaggccggctgaaactcactgtcctttcagaagacaggctccaa
atgaaatggaaagagaccgaagggaacatcaatggctacaaagttcgggtaaagcccatg
gcaggggactcggagcaagaagtcatgctgaaaaccaaaactcccaaagccacagtgggg
gggctgagccctaccaaggaatacacgctgcaggtctacgtgctcaacggctcccaggaa
gccctgtttgccaagaggaaatttgtgatagaggagctaaaaaatgcatcccagactaga
aataaccgaagaaactcaggagctgcatcaggaaagaatctcacctctttgggaacctca
gcagctgagcacagggaggtggcagaggccaccccaccacccctgaatgccgtcttgaca
cagccagcaaaggacagagctgaaaagaaaaggcagaaggggactcagccaaagggctca
ggagaaaccacaagaaaccagcccagcgcagaggccagcgcgacagaagcaacaccaaca
accacaagatcatcccagcgcgctcctgcaaactcggagcgagagtctccaggaaaagaa
aaacccacaaaggattcattgaggcgaggttcccagtttcagtgtgacacatctgcaatg
actgatatcgtcctgcttgtggatggatcctggagcatcggacgcaacaatttcaagctc
attaaggagtttctgagcaatttgatttccccattcagtatcgcccaagacaagataaga
gtagggctgtcccagtacagcagcgatccccgcacagagtgggatctgagcgcttactct
acgagggaccaggtcctggaggccgtgaggagtttgcggtacaagggcggcaacaccttt
acaggcctggcactgacccacgtcctggagcagaatctgaaaccagatgctggtgcccgg
ctggaggctgagaagttggtaatactcctgactgatggaaaatcccaggatgatgccaac
ctggctgctcagacattgaaaaacctgggcatagagatatttgccattggggtgaagaac
gcggacgaggcagagctgaagcaggtggcctcggagccgctggagctcacggtgtacaac
gtgctggatttcccactgctgagctctctggttggcaggctcactcgggtcctgtgcacc
aggatcaaagagaagagcaacaaggaaaatgcaggcagcactgtgaaagatatccctgtg
aacacgggtccccagctgagcccaactgaccttaaaatatcagctgtgacctctaagagc
atgcacttgacctggagtcctcctctgagaccacccaagaaatatcggattgtgtattat
ccatctaagggtggtatccccaaagaggtggttttagatggagcagtctcctctttgcgg
ctttccaatttgacctcgcacacggagtacctggtgtcggtgtttcctatttatgacaca
gttgttggggatgggctgagaggcgtcacctccacattgcctttgccttcccctcgctcc
ctgcgcatctctgagctgagccacaacagtatcaggctgagctggaaggcagcccaggga
gccacgcagtacctggtgctctgctccgcagcccccagtggagcagaggactatacgaca
gaggtgaaggtggcccagcctgaggtcctgctggatgggctgttgcccagcacggagtac
tctgtcgcggtgtatgcgatgtatggggaagatgcgagtgatccagccagcatccaggaa
accaccttggccttgagtcctcccagatacctgagcttctctgagctcagccacgcgtcc
gttcgagtcagctgggaggctgcgtctccggctgtgaaagctcaccgtgtcacctatgtt
tctagcagagggagcaacactggggaggtagatgttcctggcactgcaacatccactgtc
ctgagacctttgtcctccctcacccaatacttcatcagtgtccgatctacgtatgatgaa
ggagactcctttccaattactggcaatgttaccaccttaaaggtccccccgccgcaagca
ctgaaggttaccgagctctccgggaacagcctccgactgcagtgggaagctgtcgctgcc
tctgatgtggttgtctatcagatcaaatggagcacagtcggtggagagaagcctcaggag
ctctccgttgctggaaatgtggcaactgctgtcctgccaggtttgcagaagaacactgac
tataaaatatccatctgggcctattacaaagatggtgctcgaagtgacacagtttctgtt
cagcacaggaccaattcccggagcccacccaccaacctcttcatcgactccgagaccccc
accagcttccaggtccactggacccccccggacggccgcatacagcactacaaaatcacc
tacaaccctgtttctgatgccgctgctcagcaaacaatcatggcttctggcaaaagcagc
agcgtgaccctgcagtctctgctgcctgatcgagcctacaaggtgattgtttctgccatc
cactacacgggagagagcgagagcacgtcgacaacaggccggacggctcctgtgttgtct
aaattcccttcaatacgaggatttgttccatctaaaacagaggcctgccccaccatcagc
tcttccgaaggctccgtacgagggtttgatatgatggaagcttttggcttagtagagaag
gaatacgcctccattaaaggtgtagccatggagccattcgtattcagtgggtcccgtacc
ttcaccctgttcagggacactcagctcacccagaggaccagcgatgtccacctctttgca
atcccacccgagcacaccatcagcatcctcctgcgcctcctgcccgaaacccccaaggag
cccttcgctgtgtggcaaataacagacgaggacttccagccccttcttggtgttaacctt
gaccccggtaagaaatccttgacctatttcaatcatgactacaaggctgatttacaggaa
gtctcctttgaccagcaggaagtgaagaagatattctacgggagctttcataaggtgcac
gtggccgtgagccacttcaagatcaaactctacctggactgtaagaaaatagcagagaaa
cctatcaacaccgtcggcagcatctccaccgctggcttcatcatgttgggaaaagtgaca
aggaccagaggacccaggagcgggtccgcatcgttccagctgcagtctttgcagatcatg
tgcagcagcgtaggggcagaggacgacagatgctgtgatctccctgcactgagggatgag
gagacctgccctaccttagctcctgcctgctcttgtacttctggccgcccgggcttgcca
ggacctccagggccccctggcagccctgggaggagaggaccgcaaggggagcagggcgag
ccaggacccaagggtgaaccaggcccacctggacaagtagggccagagggtcctagtggc
cagcaaggctctccaggttcccaaggaatcacggttcagggtcctgtgggaccaccagga
attaaaggagagaaaggagacactggaagtcctggcatgcagggcattcctggtgtgcag
ggagctccaggcagggatggtcttcaaggtgcaaagggggtaaggggactagaaggcaca
gctgggcctccaggacctcctggaccaaggggtttccaaggagtggcaggctcccgaggc
agcagtggagagaagggacctccgggtgacgttgggccaacagggctgccaggtccaaaa
ggagaaagaggagagaaaggggaaccacagtccttggccacaattttccagctcgttagc
caggcttgtgagcggatgattcagactcatgtgttgaaatttgactcattcattcatgaa
catgcaaagaagccagttcctgtttgggaagaaaggttaaaaccaggagaaccaggacca
ccaggtcctccaggtccccctgggagcaatggagaaagaggagaaaatggcatccctgga
cagccaggcaaagatgggtatcctggagaacgaggtgctccaggacccaagggagaaaaa
gggatgcctggagccagtgaggaagggatccaaggacccagaggcagaacaggcccacca
ggagaagttgtgctggggaaaccaggtccgaagggttaccctggaaatgctggtcctcaa
ggttctcctggtgtcagaggacagcctgggcagtctggatatccaggaggttgtgatatc
tctggatgttatggggcaggtaggagagcaaaaagaaaagatttcagcggttggaggaac
acagcagccctaaaggtggaggcgcagggaggctcaggagaccctgcccagcccaagttg
cagttccctcctctgtcatgctcatgggctcgggagaaggaggaggaggaggtagctctg
aacagccatcacgggcatggctgcagtctggcgataaggtgcccctggcccagcaatgcc
caggcacagctcttcatggaactggcccaagccacgtatgtttttgtgagccatacagat
tttaagcacttggctgggtctgtgaacacggagctgaggggtgcggaggagaagctcggt
gaagcccagagcccctcagctgccagcctggcctttgagtcatgcagtcacagcaggtcc
tgggggaagcctgtatttttagactacgtctgcctttccttgcacgccgtggggctgagc
tgccttgaggaattccttcagcctttccagtctgtccatctttaccagctgaccacagac
cacatcctacacaggggctggtttgtagatgcgaagcctctttatgtgctgcttgaggga
acaagctcgtgttcttacattgctgagtatatgccaatgaatgccaccatgctatgtaca
gactttaataagaacttttcccctaaattagatggaggagatgaaaatggcttggcaaaa
cgatgcaacctcagaaagtattcccagagagctctggagcaactcaaccgcggacacgca
gtgaactacaatccatag
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integrated database retrieval system