Mycteria americana (wood stork): 142420308
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Entry
142420308 CDS
T11228
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mame Mycteria americana (wood stork)
Pathway
mame03013
Nucleocytoplasmic transport
mame03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mame00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142420308 (UPF1)
03015 mRNA surveillance pathway
142420308 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mame03019
]
142420308 (UPF1)
Enzymes [BR:
mame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
142420308 (UPF1)
5.6.2.5 RNA 5'-3' helicase
142420308 (UPF1)
Messenger RNA biogenesis [BR:
mame03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
142420308 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
142420308 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
142420308
NCBI-ProteinID:
XP_075380198
LinkDB
All DBs
Position
24:4890604..4914028
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AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagttgctcggagccgacactcagggctccgagttcgagttcaccgacttcactctt
cccagccagacccaaaccccgcccgggcccgggcaggcggggccgggacagggccaaggc
ccccccggagcggggcagggaccgccaggaccgatcgaagcacaggttaatggacctgat
ggcattctgcagaatggagctgtggatgataacgtggctaaaaccagccagcttctggca
gaattgaattttgaagaagatgaagaagatacctattacacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgaccctgcttgtgtggtttactgtaacaccagcaaa
aagtggttctgtaatgggcgtggaaatacatctggcagccacattgttaatcatcttgtg
agagcgaagtgcaaagaggtgactctccataaagacggacctctaggagagactgtcttg
gaatgttataactgtggatgtcgtaatgtgtttctccttggctttattccagctaaggca
gactctgtggttgttttgctgtgcaggcagccatgtgccagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctcttatccaagatcgctgtttcctttcatgg
ctggtaaagattccatctgaacaggaacagttgagagcacggcagattacagctcaacag
attaacaaactggaagaactttggaaggaaaatccatctgcaacccttgaggacttagaa
aagcctggtgttgatgaagaaccacagcatgtcctgcttagatatgaagatgcttatcaa
taccaaaatatatttggtcctctagtcaagcttgaggcagactatgacaagaaactcaag
gagtctcagacccaagataacatcacggtcagatgggacctgggcttgaacaagaaaaga
attgcttatttcactttgccaaagactgattcagatatgcgtcttatgcaaggagatgag
atctgcttgaggtataaaggagacctggcccctttatggaaaggaattggtcatgttatc
aaagttcctgatagttctacagattatggtgatgagatagccattgagctgaggagcagc
gttggagcgcctgtggaagttactcataacttccaagtggattttgtatggaagtctact
tcatttgacagaatgcaaagtgctttaaaaacattcgctgtggatgagacttcagtgtct
gggtacatctatcacaaactgttaggtcatgaggtagaagatgtaattattaaatgccag
ttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctggtaccggaaaa
accgtgacatcagccacaatcgtctatcatctggctagacagggcaatgggcctgtgtta
gtctgtgctccaagtaatatagccgtagatcagttgactgagaagatccatcaaactggg
ctgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaattgactctcctgtatccttc
ttggcattgcataaccagatcagaaacatggatagcatgccagaacttcagaaactgcag
cagcttaaagatgaaactggagaactgtcatctgctgatgagaaacgttaccgtgcactg
aaacgaacagcagagcgtgaattgcttatgaatgcagatgtgatctgttgcacatgtgtt
ggagctggtgatccaagacttgcaaaaatgcagttccgctccattctgattgatgaaagc
acacaggctactgagccagagtgcatggtgccagttgtcctgggagcaaagcagcttatt
cttgtaggtgaccactgccagcttggtcctgttgtgatgtgtaaaaaagctgccaaggct
ggcctctctcagtctctcttcgagaggcttgtggtgctggggattcgtccgatccgcctg
caggtgcagtatcgcatgcatcctgcactcagtgcttttccatccaatatcttctatgag
ggttcactccagaatggcgttactgcagcggaccgtgtgaaaaaaggttttgatttccag
tggccgcagccagataagccaatgtttttctatgttacacaaggacaggaagaaattgcc
agctcaggcacctcttacctgaacaggacggaagctgccaatgtggagaagataactaca
aagctattgaaagctggtgccaaaccagatcagattggcattattactccttatgaaggt
caacgatcctatctggtgcagtacatgcaattcagtggttccttgcatacgaagctctac
caggaagtggaaattgcaagtgtggatgccttccagggacgagagaaggactttattatc
ctttcttgtgtgagggccaatgaacaccaaggaatagggtttctgaatgaccccaggcgt
cttaatgtagctcttacaagagcaaggtatggagtaattattgttgggaacccaaaagcg
ctgtctaaacaaccactttggaatcacctgctgaattactacaaggagcagaaggttctg
gtggagggaccactgaataacctccgggaaagccttatgcagttcagcaagccccggaaa
cttgtcaataccatcaacccaggtgcccgtttcatgactactgccatgtatgatgcgcgt
gaggctattattccaggatctgtctatgaccggagcagtcaagggcgcccatccaacatg
tacttccagacccatgaccagatcgggatgattagtgctggccccagccacgtcactgct
atgaacattcctatcccgttcaaccttgtgatgccaccgatgccaccaccgggatacttt
ggccaggctaacggaccagccgcaggccgtggggcgccaaaaggaaagactggtcgtggt
gggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaaccttccaaatagt
caagcgagccaagatgtggtgtcccaacctttctcccagggtccactgactcaggggtat
atctccatgagtcagccatcacagatgagtcagcctgggctctcccaaccagaattatca
caggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtcacaggac
tctacttaccagggtgaacgtgcatatcaacatggcggagtgacgggactgtcacagtat
tag
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