Mycteria americana (wood stork): 142421089
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Entry
142421089 CDS
T11228
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
mame Mycteria americana (wood stork)
Pathway
mame04510
Focal adhesion
mame04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
mame00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
142421089 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
142421089 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mame00536
]
142421089 (COL2A1)
Glycosaminoglycan binding proteins [BR:
mame00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
142421089 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
142421089
NCBI-ProteinID:
XP_075381687
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All DBs
Position
26:667880..687010
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AA seq
1486 aa
AA seq
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MPGRRPLRLAAALAILLLAAVAAQDRDLPEAGSCLQDGQSYSDKDVWKPEPCRICVCDTG
TVLCDEIICEELRDCPSPEIPFGECCPICPTDQPSGWQPGPKGQKGEPGDIKDVVGPRGP
PGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA
QMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGAAGPMGP
RGPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGE
AGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGP
AGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGS
AGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGA
PGPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGP
KGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGV
MGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGP
SGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGL
PGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGK
DGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGA
DGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGA
AGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPGE
DGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGP
VGPPGLTGPAGEPGREGNPGSDGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGP
TGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGL
PGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGP
PGNPGPPGPPGPPGTGIDMSAFAGLGQAEKGPDPIRYMRADEAAGSLRQHDVEVDATLKS
LNNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMETGE
TCVYPNPSSIPKKNWWTSKTKDKKHVWFAETINGGFHFSYGDEDLAPNTANIQMTFLRLL
STEGSQNITYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDGCTKH
TGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atgcccggccgccgcccgctccgcctcgcagccgccctcgccatcctcctcctcgccgcc
gtcgccgcgcaggaccgagacctccccgaagcaggcagctgcctgcaggacgggcagagc
tatagcgataaggacgtatggaagccggagccgtgccgtatctgcgtgtgcgacacgggg
accgtcctctgcgacgagatcatctgcgaggagctgcgggattgtcccagccccgaaatc
cccttcggagagtgctgccccatatgtcccactgaccaacccagcggttggcaacctggc
cccaagggacagaagggtgaacccggtgacattaaagatgtcgtaggaccccgagggcct
ccgggaccgcagggcccggcaggcgagcagggacaacgaggggaccgcggtgagaaaggg
gagaagggcgctcccggcccccggggcagggatggagaacccggcacccctggaaatcct
ggcccccctggtccccccggtcctcccggcccccctggcctcggtgggaacttcgcagct
cagatggcaggcggcttcgacgagaaggctggaggcgcgcagatgggcgtcatgcaggga
cccatgggccccatgggaccccgcggcccccccggaccttccggtgctcccggtccccaa
ggatttcaaggcaaccccggcgagcccggcgagcccggcgctgctggtccgatgggtccc
cggggaccgccgggacctcctgggaaacctggtgatgacggcgagactggcaaacccggc
aaatccggcgagcgcggcccccccggcccccagggtgctcgtggctttcccgggacaccc
ggtctccccggagtgaaaggccaccggggctaccctggcttggatggtgccaagggagag
gcaggggctcctggagccaagggcgaatccggctcacctggcgagaacggctcccccggc
cccatgggtccccgcgggctgcctggagagagaggacgtcccggcccctccggcgctgcg
ggtgctcgtggcaacgatggtctccccggcccggctggaccccctggacctgttggcccg
gctggagcccccggcttccctggcgctcccggctcgaagggtgaagctggtcccaccggc
gcacgaggtcccgagggtgcccagggtccccgtggtgaatccggcacccccggctctcct
ggccccgccggcgcccccggtaacccagggactgacggcatccccggcgcgaaaggctcg
gcgggtgccccgggcatcgccggcgctccaggcttccccggcccccgcggcccgcccgga
ccccagggtgccaccggcccgctgggacccaagggacagacgggagaacccggcatcgcg
ggcttcaaaggcgaacagggaccgaagggtgagacgggacccgcaggaccccaaggtgcc
cccgggccggctggcgaggaaggcaagagaggagcccgcggtgaacccggtgctgccggc
cccgtgggaccacctggagagaggggtgctcctggcaatcgcggcttccccgggcaggac
gggctggctggacccaagggtgctccgggcgagcgtggccccgccggcctcgcgggtccc
aagggagccaccggcgaccccgggcgccccggagagcccgggctgcccggagccaggggt
ctcaccggccgcccaggcgacgctggtcctcaaggcaaagttggcccaaccggtgctccc
ggcgaggacggccgccccggcccccccggcccgcagggtgctcgcggccagcccggcgtg
atgggtttccccggtcccaaaggtgctaatggcgagcctggaaaagctggtgagaaagga
ctccccggagccccggggctgcggggtctccctggcaaggacggtgagacgggagctgcc
ggacccccgggacctgccggtcctgcgggcgagaggggagagcaaggagcccccggaccc
tccggcttccagggcctgcccgggccaccaggtccccccggagagagcggcaaacccgga
gatcagggtgttcccggagaagccggtgcccccggtcttgtcggtcccagaggcgaacgc
ggcttccccggtgaacgtggctctcccggcgcacaagggctgcaaggtccccgtgggctc
cccggcacaccaggcaccgacggacccaagggtgcaaccggaccggctggccccaacggc
gcccagggtcccccggggctgcagggaatgcccggcgagagaggagcagccggcatcgcc
ggtcccaagggagaccggggagacgtcggagagaagggccccgagggagcccccggaaag
gacggcgcacgcggtctgacaggtcccatcggtccccccggccctgctggccccaacggc
gagaagggtgaatccggccctcctggtccatccggcgctgccggtgcccgcggtgcccct
ggcgagcgcggtgagcccggtgcccccggtcccgccggatttgccggccccccgggcgcc
gacgggcaacccggtgccaaaggcgaacaaggagagcccgggcagaagggtgacgccggc
gctcccggtccccaaggtccctccggtgcgcctggcccacagggtccaactggagtaact
ggtcccaaaggagcccggggtgctcagggcccccctggagccaccggattccccggcgcc
gctggccgcgtgggaccacccggccctaacggtaacccaggcccccccggtcctcctggc
tctgctggcaaagatggtcccaagggtgctcgtggtgacgccggtcccccgggccgtgcc
ggtgaccccggtctccaaggccctgccggtccccctggtgagaaaggcgaacccggcgag
gatggtcctgcgggtcctgatggtccccccggtccccaaggtttggcaggacagcgtggc
atcgtcggtcttcccggacagcgtggcgagagaggcttccctgggctgccggggccatcg
ggtgaacctgggaaacaaggagcacccggctctgcaggcgaccgcggcccccccggcccc
gtgggtccccccggtctgacgggtcctgccggcgaacctggacgcgagggtaaccccggc
tctgatggaccccccggcagagacggcgcagctggcgtgaagggcgatcgtggtgagacc
ggtcccgtaggtgcccccggtgctcccggtgcccccggcgctcccggccccgttggtccc
accggcaaacaaggagacagaggcgagacgggtgcacaaggtcccatgggtccctccggt
cctgctggcgctcgaggcatgccgggtccccaagggcctcgtggtgacaagggtgagaca
ggagaggctggagagagagggctgaagggccaccgtggcttcacgggtctgcagggtctt
cccggaccacccggtccttctggagaccaaggtgctgctggtcctgcgggtccctctggt
cccaggggtcctcccggccccgtcggcccctctggcaaagacggctccaacggcatgccc
ggccccatcggtcctcccggcccccgtggacgaagcggcgaaccaggtcctgcgggtcct
cccggaaatccaggtccccctggtcctcccggccccccaggcaccggcatcgacatgtca
gcttttgctggcttgggccaggcagagaagggtcccgaccccatccgctacatgcgggcg
gacgaggctgccggcagcctgcggcagcacgacgtcgaggtggatgccacgctcaagtcc
ctcaacaaccagatcgagagcatccgcagccccgagggctccaagaagaacccagccagg
acctgccgcgacatcaagctttgccatcccgagtggaagagcggagactactggatcgac
ccgaaccagggctgcaccttggacgccatcaaagttttctgcaacatggagacgggcgag
acctgcgtctaccccaaccccagcagcatccctaagaagaactggtggaccagcaagacc
aaagacaagaagcacgtctggttcgcagagaccattaacggcgggttccactttagctac
ggcgatgaagacctggctcccaacaccgccaacatccagatgaccttcctccgcctcctg
tccaccgaaggctcccagaacatcacttaccactgcaagaacagcatcgcctacatggac
gaggagacgggcaacctgaagaaagccatcctcatccagggatccaacgacgtggagatc
agagccgagggcaacagcaggttcacgtacagcgtcttggaggacggttgcacgaaacac
actggcaaatggggcaagacagtcatcgagtaccgatcgcagaagacctcgcgcctgccc
attgtagatattgcacctatggacattggtggagccgatcaggagtttggcgtggatatt
ggcccagtctgcttcttgtaa
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