Mycteria americana (wood stork): 142421648
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Entry
142421648 CDS
T11228
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mame Mycteria americana (wood stork)
Pathway
mame03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mame00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142421648 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mame03019
]
142421648 (MTREX)
03041 Spliceosome [BR:
mame03041
]
142421648 (MTREX)
03009 Ribosome biogenesis [BR:
mame03009
]
142421648 (MTREX)
03016 Transfer RNA biogenesis [BR:
mame03016
]
142421648 (MTREX)
Enzymes [BR:
mame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142421648 (MTREX)
Messenger RNA biogenesis [BR:
mame03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
142421648 (MTREX)
Spliceosome [BR:
mame03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
142421648 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
142421648 (MTREX)
Ribosome biogenesis [BR:
mame03009
]
Eukaryotic type
Pre-60S particles
Helicases
142421648 (MTREX)
Transfer RNA biogenesis [BR:
mame03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
142421648 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
142421648
NCBI-ProteinID:
XP_075382650
LinkDB
All DBs
Position
Z:12386281..12434651
Genome browser
AA seq
1034 aa
AA seq
DB search
MADAFGDELFSVFEEDSAAAASGAKKSKVGATEGARRPGKRSEEKSSVAATGKPKREVEV
NSTEDAVLGKKPKLEDVVSEDANLADLMPQVKVQAVETVEGCTHEVALPADEDFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGM
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHSGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EGQYNKIAIPNEENVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEGDD
FGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQV
VPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIAMDIKTAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgtttggggacgagctcttcagcgtgtttgaggaggactcggccgccgcc
gcctcgggcgccaagaagagcaaagtgggcgccaccgagggtgccaggagaccaggaaaa
cggtcggaggaaaaatcttcagtagctgcaacagggaagcccaaaagggaagttgaagtc
aatagtactgaagatgctgttttgggcaagaagccaaaattggaagatgttgtatcagaa
gatgctaatctggcagacctgatgcctcaagtaaaggtgcaagctgtggaaactgttgaa
ggttgtacacatgaggttgcacttccagcagatgaagacttcacaggcctgaagccacga
actggaaaagctgcaaaagaatatccgtttattcttgatgcctttcagagagaagctatt
ctttgtgtagataataaccagtctgtgttagtgtcggctcatacatcagctggtaaaact
gtttgtgcagagtatgcaattgccctggctttgagggagaaacagcgtgtgatatttaca
agtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcaggat
gttggtttgatgactggggatgtcaccattaatcctacagcttcttgtctggtaatgaca
accgagattttgagaagtatgctttacagaggttctgaggttatgcgagaagtcgcatgg
gttatttttgatgaaatccactacatgagagattcagaacgtggtgtggtttgggaagag
acaattattttgctccctgacaacgttcattatgtgttcctttctgcaactattccaaat
gcccgtcagtttgctgaatggatctgccatcttcacaaacaaccttgccatgtgatttac
actgactatcgacccactccactgcagcattacatattcccagcaggaggagatggactc
catctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatgcaa
gtgcttagagacgcaggagacttagcaaaaggggaccagaagggcaggaaaggaggaatg
aaaggtccttcgaatgtttttaagattgtgaagatgataatggaaaggaatttccaacct
gtgattattttcagcttcagtaagaaagactgcgaagcctacgcacttcagatgacaaag
ttagatttcaatacagatgaagaaaaaaagatggttgaagaagtgttcaataatgcaatt
gattgtttgtcagatgaagacaaaaagcttcctcaggttgagcatgtacttcctcttctg
aagcgaggaattggtatccatcacagtggcctgcttcctatcttgaaagaaaccatagaa
attcttttctccgagggcctaataaaggccttatttgcaacagagacttttgctatggga
attaatatgccagccaggactgtgctatttacgagtgccagcaaatttgatggaaaagat
ttccgatggatatcatcaggtgaatacattcaaatgtcaggtcgtgcaggtcgccgaggt
atggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaattggc
aagcagcttttgaagggttcagctgatcctttaaacagtgcattccacctgacgtacaac
atggtattaaacttgcttcgagtagaggaaattaaccctgaatacatgttagaaaaatcc
ttctatcagttccaacattacagaactattccagaaatagtagaaagagtgaataatttg
gaaggacagtataacaaaatagcaattcccaatgaagaaaatgtggtcatatactacaaa
atccgacagcagcttgcaaaactgggtaaagagattgaagaatatgttcacaaaccaaag
tattgcctgcccttcctacagccgggaagactggtaaaggtgaagaacgaaggtgatgac
tttggatggggagtggttgttaatttctctaagaaatcgaatgttaagccaaattctggt
gaattggacccattatacgtagttgaagtgctactgcactgcagcaaagagagtttgaaa
aactctgctactgaggctgcaaagccagccagacctgatgagaaaggagagatgcaggtt
gttcctgttttggtacatcttctctcagctatcagcagtgtccgactttacataccaaaa
gacctgaggcctattgacaacaggcaaagtgtgttaaaatctatacaagaagtacagaag
cgatttcccgatggagtaccattactagaccctatcgatgacatgggtatcaaagatcaa
ggactgaaaaaagtaatccaaaaagtagaggcatttgagcataggatgtattcacatcct
cttcacaatgatcctaacttggaaactgtatacaaactttgtgaaaaaaaagcacagatt
gctatggatattaaaacagcaaagcgagaactgaaaaaagccagaactgtcttacagatg
gatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgccacatcttcggat
gttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactcctg
acagaaatgatgttcaatggtctcttcaatgacttatctgcagaacaggcaactgcacta
ctaagctgttttgtatttcaagagaattccagtgaaatgccaaaattgacagagcagttg
gcaggaccacttcggcaaatgcaggagtgtgcaaaaagaattgccaaggtgtcagcagaa
gcaaaactggaaattgatgaagaaaattacttaaattctttcagacccaacctaatggat
gttgtgtatacatgggcaaatggagctaactttgctcacatctgcaaaatgaccgatgtc
tttgaaggtagcataattcgttgcatgagaaggttagaagaattgcttcggcagatgtgc
caggctgcaaaagccattggaaacacagagctggaaaataagtttgcagaggggattaca
aaaatcaagagagatattgtgtttgctgcaagcctctacctgtaa
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