Marinobacter sp. MMG032: ABNF92_01820
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Entry
ABNF92_01820 CDS
T10637
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mamm Marinobacter sp. MMG032
Brite
KEGG Orthology (KO) [BR:
mamm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mamm03032
]
ABNF92_01820 (topA)
03400 DNA repair and recombination proteins [BR:
mamm03400
]
ABNF92_01820 (topA)
Enzymes [BR:
mamm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ABNF92_01820 (topA)
DNA replication proteins [BR:
mamm03032
]
Prokaryotic type
DNA Topoisomerases
ABNF92_01820 (topA)
DNA repair and recombination proteins [BR:
mamm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ABNF92_01820 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
DUF2399
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
XBQ19926
UniProt:
A0AAU7MN20
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Position
complement(397187..399829)
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AA seq
880 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGSDFIVKSSVGHIRDLPVSGSGSQTDPKERAKQAALTRK
MSPEEKAVHKKRKAREQLVARMGVDPDQDWSARYEILPGKEKVVSELKRLAKSADHIYLA
TDLDREGEAIAWHLQQTIGGEPEKYRRVVFNEITKRAIQEAFKDPGNLDNNRVNAQQARR
FLDRVVGYMVSPLLWAKIARGLSAGRVQSVAVRLIVEREREIRKFVPEEFWQLHADLASA
KADQPVRFEVTRHDDKPYRPVNEQQSSEHVSRLKAGTFKVAKREDKPTRSRPSAPFITST
LQQAASNRMGFSVKKTMMLAQRLYEAGFITYMRTDSTNLSQDAINSCRTYIQKQFGDKYL
PEKPRVYGSKEGAQEAHEAIRPTEVSRWPSDISGLEKDAEKLYDLIWRQFIACQMSDAEF
LSTSIVVANGDYELRTRGRIIKFDGFLKAAPQAAKKDEDIALPDIQVDEVLDLKKLDPSQ
HFTKPAPRYTEASLVKELEKQGIGRPSTYASIISTIQDRGYVRLQNRRFYAEKMGEIVTE
RLSESFPNLMDFDFTAKMEDELDEIAEGDVEWKKVLNDFYGRFKQQLETAESGEDGGMRA
NTPTETDIPCPSCGRNMQIRVASTGVFLGCSGYSLPPKERCKTTINLVSGDEVVSADDDV
EGEGETRLLRKKRRCPKCGTAMDSYLVDETRKLHVCGNNPDCSGYEVEKGTFRIKGYDGP
TLECDKCGSEMQLKTGRFGKYFGCTNTECKNTRKLLKNGEPAPPKMDPVPMPELQCQKVD
DTYVLRDGASGLFLAASKFPKNRETRPPLVMEIKPHRKEIDPKYDYLMDAPERDPEGNPT
VIRYSRKTKEQYVMSEKEGKATGWSAWYVNGKWQPQDKKK
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaagtctcgtaattgtcgagtcaccagcgaaagcgaagaccatcaacaagtac
ctgggctctgacttcatcgtcaaatcgagcgtcgggcatattcgtgatcttcccgtcagt
ggcagcggatcccaaaccgatcccaaggagcgtgccaaacaggctgcgctcacccggaag
atgagcccggaagaaaaggcggtgcataaaaagcgcaaggcccgtgagcagctggtcgcc
cgcatgggcgtcgacccggatcaggactggagtgcgcgttacgagatccttcccggcaag
gagaaggtggtcagcgagctcaagcgtctcgccaaatcagcagaccacatctatctggca
acggatttggaccgcgaaggggaggccatcgcctggcaccttcagcagacgatcggtggc
gagcccgagaaataccgacgtgtagtgttcaacgaaatcaccaaacgtgccatccaggaa
gccttcaaggatcccggcaatcttgacaataaccgggtgaatgcccagcaggcccgacgt
ttcctggatcgggttgtcgggtacatggtgtcgcccctgctttgggccaagattgcccgg
ggcctgtctgccggtcgggtgcaatcagtcgccgtacggctgattgttgagagggagcgg
gagatccggaagtttgttccggaggagttctggcagttacacgccgatctcgcgtccgcc
aaggcggatcagccggtccgctttgaagtaacccgccatgacgacaagccttatcgcccg
gtcaatgagcagcagagcagcgagcacgtcagccgcctcaaggcgggtacgttcaaggtt
gccaagcgggaagacaaaccaacccgttcccgcccttcggctccgtttattacctccacg
ctgcagcaggcggcgagtaaccgcatgggcttcagtgtcaaaaagaccatgatgcttgcc
cagcgtctatatgaagctggctttattacttatatgcgtactgactccaccaacctgagt
caggatgcgatcaacagttgccgcacctatattcagaagcagtttggcgataaatacctg
ccggaaaagccccgggtttacggtagtaaagagggcgcccaggaagcccacgaagccatc
cggccaacggaagtcagtcgctggccctcggatatcagtggcctggagaaagacgcggag
aagctctacgacctgatttggcgccagttcattgcctgccagatgtccgatgcggagttt
ctcagtacctcgatagtcgttgccaacggcgattatgagctgcgcacccggggccggatt
atcaagttcgacggtttcctgaaagccgcgccacaggcggccaagaaagatgaagacatc
gcgctgcctgatattcaggtagatgaagtgctggacctgaaaaaactcgacccgagccag
cactttaccaagcctgcgccgaggtacaccgaggcgagcctggtcaaagagctcgaaaag
cagggtattggccgtccctcgacctatgcgtcgattatttcgacgattcaggatcgcggc
tatgtcaggctgcagaaccgccgcttctatgccgagaagatgggcgagattgtgaccgag
cgcctgtcagaatctttcccgaatctgatggacttcgatttcaccgcgaagatggaagat
gagctcgacgagattgccgagggtgatgtcgagtggaagaaagtcctgaatgatttttac
ggccgtttcaagcagcaactggaaacggcagaaagtggcgaagacggcggcatgcgcgcc
aacacgcccaccgagactgatattccgtgcccgagctgtggtcggaatatgcagattcgt
gtggccagtacgggtgtattcctgggctgctccggttactcattaccaccgaaggagcgt
tgcaagaccaccatcaatctcgtgtccggcgacgaagtggtcagcgccgatgatgatgtc
gagggcgagggcgaaacccggctgctgcgcaagaagcgccgctgccccaagtgtggcact
gccatggacagctacctggtggacgaaacccgcaagctgcatgtctgtggtaacaatccg
gattgctctggctacgaggtagaaaagggcacgttccgcatcaagggctacgatggaccg
accctcgagtgcgacaagtgcggctctgagatgcagctgaagacggggcggtttggaaag
tattttggttgtaccaataccgagtgcaagaacacccgtaagctgctcaagaatggcgag
ccggcaccgcccaagatggacccggtacccatgccggagcttcagtgccagaaggtggat
gacacttacgttcttcgtgatggggcgtccgggttgtttctggccgcgagcaagttccct
aaaaatcgggaaacgcgaccacctctggtgatggagatcaaaccacaccgcaaggaaatc
gacccgaagtacgattacctgatggatgcgcccgagcgtgatcctgaaggcaatccgacg
gtgattcgctacagccgcaagaccaaggagcagtacgtcatgtccgagaaggaaggcaag
gcgacgggctggtccgcgtggtatgtgaacggaaagtggcagccgcaggacaagaaaaag
tag
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