Marinobacter sp. MMG032: ABNF92_07740
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Entry
ABNF92_07740 CDS
T10637
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mamm Marinobacter sp. MMG032
Pathway
mamm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mamm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ABNF92_07740 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mamm03021
]
ABNF92_07740 (rpoD)
Transcription machinery [BR:
mamm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABNF92_07740 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
RRN3
TMP_3
SQS_PSY
YL1
Motif
Other DBs
NCBI-ProteinID:
XBQ21024
UniProt:
A0AAU7MRM0
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Position
1666013..1667857
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AA seq
614 aa
AA seq
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MSGNSQKSRLKDLIARGKEQGYLTYAEVNDHLPEDIADPDQVEDIIRMINDMGIQVCEET
PDADTLLMTEGDSTADEAAAAEAAAALAAVETDAGRTTDPVRMYMREMGTVELLTREGEI
VIAKRIEEGIRDVMAAVAHFPGTAGTVIQAYDRILENEGRISDIVTGFLDPDDAEPFMGE
DTTPESSDDSDSDSDDDDDSSEEETDNGPDPEETRLRFELLNEKLDAANKALAKHGRSDK
KTQEALNELGQVFAPFKLANKAFDELVNVVRSTNDLVRENERAIMQICVRECKMPRKDFI
KSFPGNETNLDWADKIAKSKKPYAAPMAERIDEIVRLQKRIQNVQTEVDLDVADIKEINR
RVSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR
GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEEL
GERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDIQALSPVDSATAEGLREA
TRSVLAGLTARESKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR
SDHLRGFIDDQGNG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcaattcgcaaaaatcacgtttgaaagacctcattgcacgaggcaaggaacaa
ggttacctgacttacgccgaggtaaacgaccacctcccggaagacatcgccgacccggat
caggtcgaagacatcattcgcatgatcaacgacatgggtatccaggtgtgcgaagaaaca
cccgacgccgataccctgctcatgaccgagggtgattccaccgctgacgaagccgccgcc
gctgaagccgccgccgctctggccgctgttgaaaccgatgccggccgcactacggatcca
gttcgcatgtacatgcgcgaaatgggcaccgtcgagctgcttactcgcgagggcgaaatc
gtcattgccaagcgcatcgaggaaggcattcgcgatgtgatggccgccgttgcccacttc
ccaggcaccgctggcaccgttatccaggcctacgaccgcattcttgaaaacgaaggccgt
atcagcgacatcgtaaccggcttcctggatccggacgatgccgagccgttcatgggtgag
gacaccacccccgaaagctctgatgattccgactctgattcagacgatgacgacgactcc
tcggaagaagaaaccgataacggcccggatccggaagagacccggcttcgtttcgaactg
ctcaacgaaaagctggatgcagccaacaaggctttggccaagcacggtcgttccgacaaa
aaaacccaggaagccctgaacgagctgggccaggtattcgctccgttcaagctcgccaac
aaggcatttgacgaactggtcaacgtggttcgttccaccaatgatctggttcgcgagaac
gagcgcgcgatcatgcagatctgtgttcgcgagtgcaaaatgccccgcaaggacttcatc
aagtcattcccgggcaatgaaaccaacctggattgggccgacaagatcgccaagagcaag
aagccttacgcagcgccgatggccgagcgtattgacgagattgttcgcctgcagaagcgc
atccagaacgtgcagactgaagtggatctggacgttgccgatatcaaggaaatcaaccgt
cgcgtctccatcggtgaagccaaggctcgccgtgccaagaaagaaatggttgaagccaac
ctgcgtctggttatttctatcgccaagaagtacaccaaccgtggcctgcagttcctggat
ctgatccaggagggcaacatcggcctgatgaaggctgtcgacaagttcgagtaccgtcgg
ggttacaagttctcgacctacgcgacctggtggatccgtcaggctatcacccgctccatc
gcggaccaggcccgcaccatccgtattccggtgcacatgatcgagaccatcaacaagctc
aaccgcatctcccgacagatgctgcaggagatgggccgcgagcccacgccggaagagctg
ggcgagcgcatggaaatgcccgaggacaagatccgcaaggtactgaagatcgccaaagag
cctatttccatggaaaccccgatcggcgacgacgaagacagccatctgggcgacttcatc
gaagatatccaggctctctccccggtggattctgctaccgccgaaggcctgcgcgaagcc
acccgctcggtactggccggccttaccgcccgcgaatccaaggtactgcggatgcgtttt
ggtatcgagatgaacaccgaccacaccctggaagaagtcggcaaacagttcgacgtaacc
cgggagcgtatccgtcagatcgaagccaaggcgctgcgcaaactgcgtcacccgtcacgc
tccgaccacctgcgcggctttatcgacgaccagggcaacggataa
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