Marinobacter sp. MMG032: ABNF92_11215
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Entry
ABNF92_11215 CDS
T10637
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mamm Marinobacter sp. MMG032
Pathway
mamm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mamm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABNF92_11215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamm03019
]
ABNF92_11215
Enzymes [BR:
mamm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABNF92_11215
Messenger RNA biogenesis [BR:
mamm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABNF92_11215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Utp25_C
CMS1
HEM4
AAA_22
HI1480
Motif
Other DBs
NCBI-ProteinID:
XBQ18022
UniProt:
A0AAU7MKN3
LinkDB
All DBs
Position
2438554..2439876
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AA seq
440 aa
AA seq
DB search
MSFSSLGLSEQLVRATSDQGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLL
QRLGENPRTGKGPRALILTPTRELAAQVHDSVNLYSKYIPTKAAVVFGGVKINPQMMKLR
KGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQN
LLFSATFSNDIRKLAEGLLDNPVQVEVAARNTTAEKVKQSVYPVDQSQKTALLSKLVRDN
SWDQVLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVLVATD
IAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKLLAGIEKL
IKKQLPRKEVEGFEPKNNLPLKPKAKADPSRARNRNGNGGGNARPGGKPKSFGAKPGGRS
GGRSQNGGGQRSRPAQRQSA
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcttcactcggtttgtccgagcagctggttcgtgccacgtctgaccagggt
tatgacaccccgtctcctatccaggcccaggccattcccgccgtactttctggccgggac
gtgatggctgctgcccagaccggcaccggcaaaaccgccggctttaccttgcccctgctg
cagcgtctgggtgaaaatccgcgcaccggcaaaggtccccgcgccctgatcctgacgccc
acccgtgaactggcggcgcaggttcatgacagcgtgaatctttacagcaaatacattccc
accaaggctgccgtggtcttcgggggtgtgaaaattaatccgcagatgatgaagctgcgc
aagggcctggacgtgctggtggcaacacctggccgtctgatggacctgtatcagcagaac
gcggtgcgcttcaacgaagtggaaatcctggtgctggacgaagccgaccgcatgctggac
atgggctttatccgcgacattcgcaaaattcttgcgctgctgccggccaagcgccagaac
ctgttgttctctgccaccttctccaacgacattcgcaagcttgccgaaggcttgctggat
aacccggtgcaggtagaggttgccgctcgcaataccacggccgaaaaagtgaagcagtct
gtctacccggtagaccagagccagaaaaccgcgctgctgagcaaactggtgcgggacaac
agctgggatcaggtgctggtgtttacccgcaccaagcatggcgccaaccgcctgacccag
aaactggaaaaggacggcatcaccgctgccgccattcacggcaacaagtcacagggtgcc
cgtactcgcgcgctggcggacttcaaggccggtgaagtgcgtgtgctggtggccacggac
atcgccgcccgcggcctggacattaaacagctgccccaggtggtgaactttgagctgccg
aacgtgccggaagactatgtgcaccgtatcggccgaaccggtcgtgccggcgagagcggt
cacgccctgtccctggtcagcgccgacgaaggcaaattgttggcgggtatcgagaagctg
atcaagaagcaactgccgcgtaaggaagtcgaaggctttgagccgaaaaacaacctgccg
ctcaagcccaaggcaaaggccgatcccagccgcgcccgtaaccggaatggtaacggcggt
ggcaatgctcggcccggcggaaagccgaagagcttcggcgccaaaccaggtggtcgtagc
ggtggccgtagccagaatggcggtggtcagcgaagtcgtcctgcccagcgccagagtgcc
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