KEGG   Marinobacter sp. MMG032: ABNF92_16700
Entry
ABNF92_16700      CDS       T10637                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
mamm  Marinobacter sp. MMG032
Pathway
mamm02024  Quorum sensing
mamm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mamm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ABNF92_16700 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    ABNF92_16700 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mamm03019]
    ABNF92_16700 (hfq)
   03036 Chromosome and associated proteins [BR:mamm03036]
    ABNF92_16700 (hfq)
Messenger RNA biogenesis [BR:mamm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     ABNF92_16700 (hfq)
Chromosome and associated proteins [BR:mamm03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    ABNF92_16700 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: XBQ19072
UniProt: A0AAU7MNN1
LinkDB
Position
3627734..3627985
AA seq 83 aa
MSKGHSLQDPYLNALRKERIPVSIFLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPARNVRIPQQAPGGEGESED
NT seq 252 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgttacaagacccttaccttaatgcactgcgcaaggaacgcatt
ccggtttccatctttctggtcaacggtatcaagctacagggccagatcgaatctttcgac
cagttcgtgattttgctgaaaaatactgtcagccagatggtctacaagcacgctatttcc
actgtggtacctgcacgtaatgttcgcattccgcagcaggctccgggaggagagggcgag
tctgaggactga

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