Marinobacter sp. MMG032: ABNF92_18180
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Entry
ABNF92_18180 CDS
T10637
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mamm Marinobacter sp. MMG032
Pathway
mamm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mamm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABNF92_18180 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamm03019
]
ABNF92_18180 (rne)
03009 Ribosome biogenesis [BR:
mamm03009
]
ABNF92_18180 (rne)
Enzymes [BR:
mamm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABNF92_18180 (rne)
Messenger RNA biogenesis [BR:
mamm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABNF92_18180 (rne)
Ribosome biogenesis [BR:
mamm03009
]
Prokaryotic type
rRNA processing factors
ABNF92_18180 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
XBQ19352
UniProt:
A0AAU7MPG3
LinkDB
All DBs
Position
complement(3952007..3955132)
Genome browser
AA seq
1041 aa
AA seq
DB search
MKRMLINATHPEELRVALVDGQRLFDLDIESSSREQKKANIYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISKEYFKKSPGQIEGKINIKDVVSEGQEVIVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGDERAQLKEAMNDVQVPKSMGIIVRTAGIGRSTEE
LQWDLDYLVQFWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDANGVYED
VLNFVRAVMPTFENKIKLYKDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALV
SIDINSSRATKGQDIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVE
QKMREALEIDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLA
LSIMRLIYEESSKDKTGEVRAVVPVSVATFLLNEKRKQLADIEARQEVSVVVVPVPHMET
PHFEIIRMRQDETTPEHISSHQVAQEYSEREEEIFEAPAPEKPVREQAAVKAIRPSAPAP
TPAAPKAEETADQEEGLFRRLGRKISAFFSGEEEQKTEILDQGKNQREDRRNQGRQDRRK
SRVARGDEQRSGGNRSGNDRRQGGQQSRGDDNRGRGRNRSDDQSRGNQNRQGADNKGSDN
RGGDNKGGDNKGSDNRRDNRRDNQGRGRNRPQRDQKDNRDQKDQKDQGPQDNATKSGSDE
KRRKPRRQRNRDGSPAETPASSPADRKAARSEKHQKDTQPEKGRDESKAEVKAEQPMEPS
NKAPAKSEKSESRTDTASAANEAPKPAAAQEQPTKEPKPEQTPSARAPSDSKPQAQSEET
AKASGKPVEKPEADQLNAEKAEKGGAAKTEKSSEPRPKPQQAGAKAAEQAQQTDTKPEPE
PKTAAGSEQAPEAKKQPAESKEAAAPKAKPEPAAKSEAAAEPGKAKEPAEVKAAAGVQAP
ETQPEPKQPAPAKAEEKKAEPEKAEAEKVEKPSAPEPAAKDTPTETPTVDVPVTPGRAYN
DPREVRKRQKAAEEAKKAGSN
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctcattaatgcaactcatcctgaagagttgcgcgtcgccctcgttgac
ggccagcgtctgtttgatcttgatatcgaatccagctcccgcgagcagaaaaaggcgaac
atctataaaggccgcattacccgcgttgagcccagccttgaagccgcctttgtcgatttc
ggtgccgagcgccacggttttcttccgctcaaggaaatttccaaggaatacttcaagaaa
tctcccggccagatcgaaggcaagatcaacatcaaggacgtagtgtccgaaggccaggaa
gtaatcgtccaggtggacaaggaagagcgtggcaacaagggcgcggccctgaccaccttc
atctccctcgccggccgctatctagtgctgatgcccaacaacccccgtgccggcggtatt
tcacgccgcattgagggcgatgagcgggcccaactcaaagaagccatgaacgatgtccag
gtgcccaagtccatgggcatcatcgtccgcaccgccggtatcggccgcagcaccgaagaa
ctccagtgggatctggactaccttgtgcagttctgggaagccatcacccaggccgctggt
gagcgcaaggcgcccttcctgattcatcaggaaagcaacgtcatcattcgcgccgttcgc
gactacctgcgccaggatatcggcgaggtgctgattgacgccaacggggtttacgaggac
gtcctgaatttcgtccgcgccgtcatgcccacgttcgaaaacaagatcaagctgtacaaa
gatgaaatccccctgttcagtcgctaccagattgaaggccagatcgagacggcgttccag
agggaagtaaaactgccctccggcggctccatcgtgattgacccgaccgaggccctggtt
tccatcgacatcaactcctcccgggccaccaaaggccaggatatcgaggaaaccgcactc
cagaccaacctggaggcggccgaggaaatcgcccgccagctgcgactgcgtgacatgggt
ggcctgattgtcatcgacttcatcgacatgacgccggccaagcaccagcgggaagtggaa
cagaagatgcgggaggccctggaaatcgaccgggcccgggttcaggtcggcaagatctcc
cgtttcggcctgctggaaatgtcccgtcagcgcctgcgcccctccctgggagagacccgc
agcgaagtctgcccccggtgcgaaggacagggcacgattcgcggtatcgagtccctcgcc
ctcagcatcatgcggctgatctacgaggaatcctcgaaggacaagaccggcgaagtacgg
gccgttgtgccggtatcagttgccactttcctgctgaacgagaagcgtaagcaactggcg
gacattgaagctcgccaggaagtcagtgttgtcgtggtgccagtaccacacatggaaacg
ccacactttgaaatcatccggatgcgtcaggatgagaccacgcccgagcatatctccagc
caccaggtggcccaggaatacagcgagcgcgaagaggaaatctttgaggctccggcccct
gaaaagccggttcgagagcaggccgctgtgaaggccatccggcccagcgcgcccgcgccc
actccggcagcaccgaaagcagaggaaacagccgatcaggaagaaggcctgttccgccgg
ctcggtcgtaagatctccgccttcttcagcggcgaagaagagcaaaagaccgaaattctc
gaccagggcaagaaccagcgcgaagaccgccgaaaccagggacggcaggaccgtcgcaag
tcccgggtagcccgcggtgacgaacagcgctccggtggcaaccgcagtggtaacgaccgg
cgccagggcggccaacaaagccgtggtgacgacaaccgcgggcgcggacgcaaccgcagt
gatgaccagagccgcggcaaccagaaccgtcagggggctgacaacaaaggctcggacaat
cgcggaggcgataacaagggcggagacaacaaaggctctgataatcgccgtgataaccgt
cgcgataaccagggccgtggccgcaacaggccgcagcgggaccagaaggacaaccgcgac
cagaaggaccagaaggatcagggcccgcaggataacgccaccaagtccggctctgacgaa
aagcgtcgcaagccacgtcgccagcgtaatcgtgacggatcgcccgctgagacaccggcc
tcctcaccggcggaccgtaaagcagcccgcagcgagaagcaccagaaggacacccaacct
gaaaaaggtcgggacgagagcaaggcggaagtaaaagccgagcaaccgatggagccttca
aacaaggcgcccgcaaagtctgagaagtccgaatcccggactgatacagcgtcagcggcc
aatgaagcgccgaaaccagctgcagcccaggaacagcccacaaaggagccgaagcctgag
cagacgccttcagccagggcaccctctgacagcaaaccgcaggcccagtcagaagagacg
gcaaaggccagtggcaagccagttgaaaagcctgaagctgatcagttgaacgctgaaaag
gccgaaaagggtggggccgccaaaacggaaaagagctccgaacctcgcccgaagccgcaa
caggctggcgcaaaggccgccgagcaggctcagcaaacagacaccaagccagagccggaa
cccaagaccgcagccggaagcgagcaggcaccggaagccaaaaagcagcctgctgaatca
aaagaggcagccgcgcccaaggccaaacccgagccggcagccaaatcagaggcggcagca
gagcccggaaaagctaaggagcctgcggaggtgaaggcggcagccggagtccaggccccg
gaaacccagccggaaccgaagcaaccggcaccggcaaaagccgaggaaaagaaggccgag
cctgaaaaggcagaagctgaaaaagtcgaaaagccctctgctccggagcctgcagcgaag
gacacgcccaccgagactccgacagtcgacgtgccggtgacaccgggtcgcgcctacaac
gaccccagagaggtccgcaagcgtcagaaagctgcggaagaggccaagaaggccgggagt
aactaa
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