Micavibrio aeruginosavorus EPB: A11S_2063
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Entry
A11S_2063 CDS
T02517
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
man
Micavibrio aeruginosavorus EPB
Pathway
man03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
man00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A11S_2063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
man03021
]
A11S_2063
03400 DNA repair and recombination proteins [BR:
man03400
]
A11S_2063
Enzymes [BR:
man01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A11S_2063
Transcription machinery [BR:
man03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A11S_2063
DNA repair and recombination proteins [BR:
man03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A11S_2063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AGH98863
UniProt:
M4VI34
LinkDB
All DBs
Position
complement(2103933..2108126)
Genome browser
AA seq
1397 aa
AA seq
DB search
MNELMNLFGQPTGPQSFDSIRISIASPEQILSWSFGEVKKPETINYRTFKPEKDGLFCAR
IFGPIKDYECICGKYKRMKFKGIICEKCGVEVTLTKVRRERMGHIQLASPVAHIWFLKSL
PSRIGLMMDMTLKELEKVLYFESYIVLEPGMTPLKPLQLLTEEEFMDAQDQYGDESFEAG
IGAEALKKLMTAIDLDAEKIKVEEDLRETSSEAKRKKLVKRLKLIESFLESGTRPEWMIM
DVVPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITVGP
ELKLHQCGLPKKMALELFKPFIYHKLELYGLATTVKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIESQLE
ARCLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSIALDKQKGEGMIFRGVGEIQHAIAE
GHLSLHAKIKCRYHTVDENNQPVTLIVDSTPGRMMISELFPRHPELPFSLINQSLTKKEV
SNLIDMVYRHGGQKEAVIFCDRMMKLGFRHACQAGISFGKDDMIIPVAKEALVKEAEDKV
KEFERQYQDGLITKGEKYNKVVDIWSKCTDDVADAMMKGISSYADGTMNSVYMMAHSGAR
GSAAQIRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLADTALKTA
NSGYLTRRLVDVAQDAIITQHDCGTDKGVTMRAVMSGADVIVNLGERILGRTAAVDVKNP
LSGEMLVAQGDLIDEVKAEMIETAGVDSVLVRSVLTCESAIGVCGKCYGRDLARGTPVNV
GEAVGVMAAQSIGEPGTQLTMRTFHIGGAAQRGAEKSSVEAPVEGTIEIRHHNVVKNSEG
VTIVMGRNTEVVVRDAKGNEKLAQRLPYGSRLLVNEGDKVKPAQKLAEWDPYTIPILTEK
DGVAHYYDLVEGLSISEKTDEATGISSKVVIDWRSQPKGGTLKPRVSLLDAKGKVITLPN
GLPANYYLSVDTILSVENGAEVRAGDIIGRIPRETSKTRDITGGLPRVAELFEARKPKDF
AIISEIDGQVEFGKDYKSKRRLIVKPADAQAEAREYLIPKGRHLAVHEGDFVRRGDALLD
GAMVPHDILDVMGVEALSDYLTQEIQDVYRLQGVKINDKHIEVIVRQMLQKTEILTPGDT
TFLVGEQVDRDEFEITNQKYIEAGKIPATGKPILQGITKASLQTKSFISAASFQETTRVL
TEAATQGKMDTLNGLKENVIVGRLIPAGTGSYINQVKKLAAQRDQLAIAAQQEAEALAHA
DMPAMGDDAGMDKAANG
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaactgatgaatctctttggccagccgaccggaccgcagtcttttgactccatc
cggatctcgatcgccagcccggaacagatcctgtcctggtcctttggtgaagtgaaaaag
ccggaaaccatcaactaccgcacattcaaaccggaaaaagacggtttgttctgcgcccgc
atctttggtccgatcaaggactatgagtgcatttgcggtaaatacaaacgcatgaagttc
aaaggcatcatctgcgaaaagtgcggcgttgaagtcacgctgaccaaagttcgccgtgag
cgcatgggccacatccaactggcatcgccggttgcgcacatctggttcctgaagtccctg
ccgtcccgcatcggtttgatgatggacatgactttgaaagagctggaaaaggttctgtat
ttcgaatcgtacatcgttctcgagccgggcatgacccctctgaaaccgttgcaattgctg
acggaagaggagttcatggatgctcaggatcagtacggcgacgaaagcttcgaagccggt
attggcgccgaagcgctgaaaaaactgatgactgcgattgatctggatgcagagaaaatc
aaggttgaggaagatctgcgtgaaacctcctccgaagccaagcgtaagaagctggtcaag
cgtctgaaactgatcgaatccttcctcgaatccggcacccgtccggaatggatgattatg
gatgtcgttccggttctgccgccggaactgcgcccgctggttccgctggatggtggccgt
ttcgcaacgtccgacctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctg
aagcgcctgatcgaactgcgcgctccggacattatcgttcgtaacgaaaagcgtatgctg
caggaagctgtggacgcgctgttcgacaacggccgtcgtggccgcgtgatcaccggtgcg
aacaagcgcccgctgaaatcgctgtccgacatgctgaaagggaagcaaggtcgcttccgt
cagaacttgctgggtaaacgcgtcgactattctggccgttcggttattaccgttggtccg
gaactgaagctgcaccagtgcggtctgccgaagaaaatggctctggagctgttcaaaccg
ttcatttaccacaagctggaactgtatggcctggccaccacagtgaaagccgccaagcgt
atggtggaaaaagagcgtccggaagtttgggatatcctggaagaggttatccgcgaacac
ccggttatgctgaaccgcgcaccgaccctgcaccgtctgggcatccaggcgtttgaaccg
accctgatcgaaggtaaagcgattcagctgcacccgctggtctgcacggcgttcaacgct
gacttcgacggtgaccagatggccgttcacgttccgctgtcgattgaatcgcagctggaa
gcgcgctgcctgatgatgtccacgaacaacattctgtccccggccaacggtaaaccgatt
atcgttccgtcacaggatattgttctgggtctgtattacctgtcgatcgcactggacaag
caaaagggcgaaggcatgattttccgtggtgttggcgaaatccaacacgccatcgcggaa
ggtcacctgtccctgcatgcgaaaatcaagtgccgttaccacaccgttgatgaaaacaac
cagccggtaacgctgatcgttgattccacgccgggccgtatgatgatttcggaattgttc
ccgcgtcatccggaactgccgttcagcctgatcaaccaatcgctgacgaagaaagaagtt
tcgaacctgatcgacatggtttatcgccatggcggccagaaagaggcggtgatcttctgc
gatcgtatgatgaagctgggcttccgtcacgcgtgccaggccggtatttccttcggtaag
gatgacatgattatcccggtcgcaaaggaagctttggtgaaagaagccgaagacaaggtc
aaggaattcgagcgtcaataccaagacggtctgattaccaaaggcgaaaagtacaacaaa
gtcgtcgatatctggtcgaaatgcacggatgacgtggccgacgccatgatgaagggcatt
tccagctacgccgacggtacgatgaactcggtttacatgatggcccactcgggtgctcgt
ggttccgcagctcagatccgtcagttggccggtatgcgtggtttgatggcgaagccgtca
ggcgaaattatcgagacgccgattatctccaactttaaggaaggtctgtcggttctggaa
tacttcaactccacccacggcgcccgtaagggtctggcggatacggcgttgaaaacggca
aattccggttacctgacccgtcgtctggttgacgttgcacaggatgcaattatcacccaa
cacgattgcggtacggacaaaggcgtaacgatgcgcgctgtgatgagcggtgcggacgtt
atcgtcaacctgggcgagcgtattctgggtcgtacggcggctgtcgatgtgaaaaacccg
ctgtccggtgaaatgctggtggctcagggcgatctgatcgacgaagtgaaagctgaaatg
atcgaaaccgctggcgttgacagcgttctggttcgttcggttctgacctgtgaaagcgcg
atcggcgtttgcggcaagtgctatggccgtgacctggcccgcggtacaccggtgaacgtt
ggtgaagctgtcggcgttatggccgcgcagtcgatcggcgagccgggtacacagctgacc
atgcgtacgttccacattggtggtgcggcccagcgtggtgcggaaaaatcctctgtcgaa
gctccggttgaaggcacgattgaaatccgtcaccacaacgttgtgaagaactccgaaggc
gtaacgatcgttatgggtcgtaacaccgaggttgttgttcgcgacgccaagggtaacgaa
aagctggctcaacgcctgccgtacggttcccgtttgctggtgaacgaaggtgacaaggtc
aagccggcccagaaattggccgagtgggacccgtacaccatcccaatcctgacggaaaag
gacggtgtggcgcactattacgacctggtcgaaggtctgtcgatctcggaaaaaaccgac
gaggcaaccggtatttcgtccaaagtcgttatcgactggcgctcccagccgaagggcggc
acgctgaaaccgcgtgtatccctgttggatgccaagggtaaggttattaccctgccgaac
ggtctgccggcgaactactatctgtccgttgataccattctgtcggttgaaaacggtgcg
gaagtccgcgcaggtgacattatcggtcgtatcccgcgtgaaacatccaagacccgcgat
attaccgggggtctgccgcgcgtggccgaattgttcgaagcccgtaagccgaaagatttc
gcgattatttccgaaatcgatggtcaggtggaattcggcaaggactacaagtccaagcgt
cgtctgatcgtgaaaccggcggatgcgcaggctgaagcccgtgaatacctgatcccgaaa
ggccgccacctggcagtacacgaaggtgacttcgtccgccgcggtgatgcgttgctggac
ggggcgatggtgccgcacgatattctggacgttatgggggttgaggctttgtccgactac
ctgacccaggaaatccaggacgtttaccgtctgcagggtgttaagatcaacgacaagcac
atcgaggtgatcgttcgccagatgctgcagaaaaccgagatcctgaccccgggtgacacc
accttcctggttggcgaacaggttgaccgtgatgagttcgaaatcaccaaccagaaatac
atcgaagccggcaagatcccggcgacgggtaagccgatcctgcagggtatcaccaaggcc
tctctgcaaaccaaatcgttcatttctgcggcttcgttccaagaaacgacccgcgttctg
accgaggcggccacgcaaggcaagatggacaccctgaacgggttgaaggaaaacgtgatc
gtcgggcgtctgatcccggcgggtaccggttcctatatcaaccaggtcaagaaactggct
gcccagcgtgaccagttggccatcgccgcccagcaagaggccgaggctctggcccacgcc
gatatgccggccatgggtgatgatgccgggatggacaaggccgcaaacggctaa
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integrated database retrieval system
