Massilia antarctica: IV454_02315
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Entry
IV454_02315 CDS
T08186
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
manc
Massilia antarctica
Pathway
manc03030
DNA replication
manc03430
Mismatch repair
manc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
manc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IV454_02315 (dnaE)
03430 Mismatch repair
IV454_02315 (dnaE)
03440 Homologous recombination
IV454_02315 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
manc03032
]
IV454_02315 (dnaE)
03400 DNA repair and recombination proteins [BR:
manc03400
]
IV454_02315 (dnaE)
Enzymes [BR:
manc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IV454_02315 (dnaE)
DNA replication proteins [BR:
manc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IV454_02315 (dnaE)
DNA repair and recombination proteins [BR:
manc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IV454_02315 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RMI2
HROB
Motif
Other DBs
NCBI-ProteinID:
QPI50477
LinkDB
All DBs
Position
complement(518648..522202)
Genome browser
AA seq
1184 aa
AA seq
DB search
MSMDVIEAGSATLAAPAKPAAPAFVHLRVHSEYSIVDGLVRIDDIVAAAAKDKQPALAIT
DLANLFGMVKFYKSARGKGIKPVIGVDAWISNDDNRDKPSRLLLLAKNRMGYLQLCELLS
KAWLSNQHKGRAEIRPEWLDALAASESSLSPGENQANGLIVLSGAHFGDVGTAIENGNLA
LAERCAQRWAAVFPGHFYIEVQRAGQPNQEAQVRHAVALAAKLGLPVVATHPVQFLSAEE
FVAHEARTCIAEGEMLANAKRVKRFNEEMRFKSQAEMAELFADMPAALANSVEIAKRCNV
VLTLGKPQLPDFPTPPGMSIDEFLVAESQAGLEQRLIHLYPDPVKREAARPRYDARLKFE
TDTICNMKFPGYFLIVAEFIKWAKENGVPVGPGRGSGAGSLVAYSLLITDLDPLQYNLLF
ERFLNPERVSMPDFDIDFCQEGRDRVIQHVKDLYGKEAVSQIATFGTMAAKGAIRDVGRV
LDFGYNFCDGISKLIPFKPGKPVTIADAIEEEPMLKERLENEDEVKQLLALAQQVEGIAR
NIGMHAGGVLIAPGKLTDFCPLYTQGGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILD
RAVRYIKQLDPAANADFALEKLPLNDKASYELLTKAKTVAVFQLESRGMQGMLKDARPDR
FEDIIALVALYRPGPMDLIPDFCKRKHGERFDYPDPRTESILSETYGIMVYQEQVMQMAQ
IVGGYSLGGADMLRRAMGKKKAEEMAEHREIFRAGAAKDGLTAEKADEIFDLMEKFAGYG
FNKSHAAAYALLSYHTAYLKAHHTAAFMAANLSLAMDDTDKIKILVEDSLDVCGLTLLPP
DINHSDYRFMPEGPPPSVTGKRVTNIRYGLGAVKGSGQSAIEAIIAARTSGGPFTDLFDF
CKRVDRKQINRRTIESLIRSGAFDCFKVDRAILLASVPFAVEVADQASASVNQVSLFGGD
DSDLVAPPEYVKATPWTDRQKLSEEKTALGFYLSGHMFDSFATEARRFARTKLTDLEPSR
EPRMMCGVITGVRTQMTQRGKILIVSLDDKSGTVEVTVYSEVVESNKNIFKEDEFLAVVG
KVSEDRFNGGLRITAEKVFDLTSARVQYGRQLGLYLPSRVASSKIAEVLQPHRAMSGLPV
AMRVKPQGVDCTLQFGDDWRVAPSDALTLALEQVLGAREVAVEY
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgagtatggatgtcatcgaagccgggagcgccacgctcgccgcgccagccaagccggcc
gcaccggctttcgttcacctgcgtgtgcactccgaatactccatcgtcgacggcctggtg
cgcatcgacgacattgtcgccgccgccgccaaggacaagcagccggcgctggccatcacc
gacctggccaatctgttcggcatggtcaagttctacaaatcggcgcgcggcaagggcatc
aagccggtcatcggcgtggacgcctggatcagcaacgatgacaaccgcgacaagccctcg
cgcctgctgctgctggccaagaaccgcatgggctacctgcagctgtgcgaactgctgtcc
aaggcctggctgagcaaccagcacaagggccgcgccgaaatccgtcccgagtggctcgat
gcgctcgccgccagcgaatcgtccctgtcgcccggcgaaaaccaggccaatggcctcatc
gtgctctccggcgcccacttcggcgacgtcggcaccgccatcgaaaacggcaacctggcg
ctggccgagcgctgcgcccagcgctgggccgcggtcttccccggccatttctacatcgaa
gtgcagcgcgccggccagcccaaccaggaagcccaggtgcgccatgccgtcgcgctggcc
gccaaactgggcttgccggtggtcgccacccatccggtccagttcctgtcggccgaggaa
ttcgtcgcccacgaagcgcgcacctgcatcgccgaaggcgaaatgctggccaacgccaag
cgggtcaagcgcttcaacgaagaaatgcgcttcaagtcgcaggccgagatggccgagctg
ttcgccgacatgccggccgcgctggccaactcggtcgaaatcgccaagcgctgcaacgtc
gtgctcaccctgggcaagccgcagctgccggacttcccgaccccgcccggcatgagcatc
gatgaattcctggtcgccgaatcccaggccggcctggagcagcgcctgatccatctgtat
ccggacccggtcaagcgcgaagcggcgcgcccgcgctacgacgcgcgcctgaaattcgag
accgataccatctgcaacatgaagttccccggctacttcctgatcgtggccgaattcatc
aagtgggccaaggaaaacggcgtgccggtcggcccgggccgcggttcgggcgccggttcc
ctggtcgcgtattcgctcctgatcaccgatctcgatcccctgcaatacaacctgctgttc
gagcgcttcctcaatcccgaacgcgtttcgatgcccgacttcgacatcgacttttgccag
gaagggcgcgacagggtcatccagcacgtgaaggatttgtacggcaaggaagcggtctcg
cagatcgccaccttcggtaccatggcggccaagggcgcgatccgcgacgtcggccgcgtg
ctcgatttcggctacaatttttgcgacggcatctccaagctgatcccgttcaagccgggt
aagcctgtgaccatcgccgacgccatcgaagaagaaccgatgctcaaggagcgtctggag
aacgaggacgaggtcaagcagctgctggcgctggcgcagcaggtcgaaggcatcgcccgc
aacattggcatgcacgccggcggggtgctgatcgccccgggcaagctgaccgacttctgc
ccgctgtacacccagggcggcgactcgggcgtggtctcgcagtacgacaaggatgacgtg
gaggccgtgggcctggtcaagttcgactttttgggcctgaccacgctcaccattctcgac
cgcgcggtgcgctacatcaagcagctcgacccggcggccaacgccgacttcgcgttggag
aagctgccgctcaacgacaaggcttcctacgagttgctgaccaaggccaagacggtcgcg
gtgttccagctggagtcgcgcggcatgcagggcatgctcaaggacgcgcgccccgaccgt
ttcgaggacatcatcgccctcgtcgcgctgtaccgtccgggcccgatggacctgattccc
gacttctgcaagcgcaagcacggcgaacgtttcgattaccccgatccgcgcaccgaatcg
attttgtccgaaacctacggcatcatggtgtatcaggagcaggtgatgcagatggcgcag
atcgtcggcggctattcgctcggcggcgccgacatgctgcgccgcgcgatgggtaaaaag
aaggccgaagagatggccgagcaccgcgagattttccgcgccggcgccgccaaggatggc
ttgacggccgaaaaggccgacgagattttcgacctgatggaaaaattcgcgggctacggc
tttaacaagtcgcacgccgccgcctacgcgctgctgtcctaccataccgcctatctcaag
gcgcatcacaccgccgccttcatggcggccaacttgtctttggcgatggacgacaccgac
aagatcaagatcctggtcgaggattcgctggacgtgtgcggcctcaccttgctgccgccc
gatatcaaccattccgactaccgcttcatgccggaaggcccgccgccgtccgtcaccggc
aagagagtgaccaacatccgctacggcctgggcgcggtcaagggctcgggccagtcggcc
atcgaagcgatcatcgccgcgcgcaccagcggcgggccgttcaccgacctgttcgatttc
tgcaagcgggtagaccgcaagcagatcaaccgccgcaccatcgagtccctgatccgcagc
ggcgccttcgactgcttcaaggtcgaccgcgcgatcctgctggcgtcggtgccgttcgcg
gtcgaagtggccgaccaggcctcggcctcggtcaaccaggtcagcctgttcggcggcgac
gacagcgacctggtggcgccgcccgagtacgtgaaggcgaccccgtggaccgaccgccag
aagctgtccgaggaaaagaccgcgctcggcttctatttgtcgggccatatgttcgattcg
ttcgcgaccgaggcgcgccgcttcgcgcgcaccaagctgaccgacctggaaccgtcgcgc
gagccgcgcatgatgtgcggcgtgatcaccggcgtgcgcacccagatgacccagcgcggc
aagatcctgatcgtctcgctcgacgacaagagcggcacggtcgaagtgacggtgtacagc
gaagtggtcgagtcgaacaagaacatcttcaaggaagacgaattcctggcggtggtgggc
aaggtgtcggaagaccgcttcaacggcggcctgcgcatcacggccgagaaggtgttcgac
ctgacgtcggcgcgcgtgcagtacgggcgccagctcgggctgtacctgccgtcgcgggtg
gcgtcctcgaagatcgccgaggtgctgcagccgcaccgcgccatgagcggcctgccggtg
gcgatgcgggtcaagccgcagggcgtcgattgcaccttgcagttcggcgacgactggcgg
gtggcgccctcggacgcgctgaccctggccctggaacaggtgctgggcgcgcgcgaagtc
gcggtggaatactaa
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