Massilia antarctica: IV454_02465
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Entry
IV454_02465 CDS
T08186
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
manc
Massilia antarctica
Pathway
manc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
manc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IV454_02465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manc03019
]
IV454_02465
Enzymes [BR:
manc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IV454_02465
Messenger RNA biogenesis [BR:
manc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IV454_02465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
HNF-1_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QPI50504
UniProt:
A0AA48WF79
LinkDB
All DBs
Position
complement(565096..566613)
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AA seq
505 aa
AA seq
DB search
MSETPITIEADSEPTVKFADFGLAPEILRALTDQGYIHPTPIQAAAIPIVLQGRDVMGAA
QTGTGKTAGFSLPIIQLLLAHASPSMSPARHPVRALVLTPTRELAVQVAENVKAYAQHTP
LRSTVVFGGMDMKGQTIILKGGVEIVIATPGRLLDHIEQKNVSLGQVQMLVMDEADRMLD
MGFLPDLQRIINLLPKKRQNLMFSATFSPEIKKLANSFLTDPVTIEVARSNATADKVTQI
VYKVAEEAKRDVVEFLIRGRDLKQVLVFSNTKIGASRLSRHLEQGGIKATAIHGDKTQQE
RMAALDAFKKGEIDVLVATDVAARGLDISDLPCVINFDLPYNAEDYVHRIGRTGRAGASG
DALSVYSDKDERLLVDIEKLIKQTITRGELAGFVASSSASAGRGEPSGERRPRRDDSAAG
SGAARPPGRTPERERSGERSFTSSSSGGSSGPRSGPYPRRDKVDPWFLTPYEPAKKTTPA
VADQVSTSTKPKQKIAVLLGGSPKQ
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaacaccgattaccatcgaagccgacagtgaacccaccgtcaagttcgccgat
ttcggccttgcgccagagatcctgcgcgcactgacggaccagggctacatccacccgacg
ccgatccaggccgcggccatcccgatcgtcctgcaggggcgcgacgtcatgggcgcggcc
cagaccggcaccggcaagaccgccggtttttcgctgcccatcatccagctgctgctggcc
cacgccagtccgagcatgtcgccggcgcgccatccggtgcgcgcgctggtgctcacgccc
acgcgcgagctggcggtgcaggtggccgagaacgtcaaggcctacgcccagcacaccccg
ctgcgctcgaccgtggtgttcggcggcatggacatgaagggccagaccatcatcctcaag
ggcggggtcgagatcgtcatcgccaccccgggccgcctgctcgaccatatcgaacagaaa
aacgtcagcctgggccaggtgcagatgctcgtcatggatgaagccgaccgcatgctcgac
atgggcttcctgccggacttgcagcgcatcatcaacctgctgccgaaaaagcgccagaac
ctgatgttttcggcgaccttctcgccggaaatcaagaagctggccaacagtttcctgacc
gatccggtgaccatcgaagtggcgcgcagcaatgccaccgccgacaaggtcacccagatc
gtctacaaggtggccgaggaagccaagcgcgacgtggtcgaattcctgatccgcggacgc
gacctgaagcaggtgctggtgttctcgaacaccaagatcggcgcctcgcgcctgtcgcgc
cacctggagcagggcggcatcaaggccaccgcgatccacggcgacaagacccagcaggaa
cgcatggccgcgctcgacgcctttaaaaagggcgagatcgacgtgctggtcgccaccgac
gtggccgcgcgcggtctcgatatttccgacttgccgtgcgtgatcaacttcgacctgccc
tacaacgccgaggattatgtgcaccggatcggccgcaccggccgtgccggcgcctcgggc
gacgccctgtcggtgtattcggacaaggatgagcgcttgctggtcgatatcgaaaaactg
atcaagcaaaccatcacgcgcggcgaactggccggtttcgtggccagcagcagcgccagc
gcggggcgcggggagccgtccggcgagcgccgtccgcgccgcgacgatagcgctgccggc
agcggcgccgcccgcccgcctggacgtacgcccgagcgcgagcgcagcggcgaacgcagt
ttcaccagcagttcctccggcggttcttccggtccgcgttcgggtccgtatccgcgccgc
gacaaggtcgatccctggttcctgaccccgtacgagccggccaagaagacgacgccggcg
gtcgccgaccaggtcagcaccagcaccaagcccaagcagaagattgccgtgctgctcggc
ggctcgcccaaacagtaa
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