Massilia antarctica: IV454_03170
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Entry
IV454_03170 CDS
T08186
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
manc
Massilia antarctica
Brite
KEGG Orthology (KO) [BR:
manc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
manc03016
]
IV454_03170
Enzymes [BR:
manc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IV454_03170
Transfer RNA biogenesis [BR:
manc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IV454_03170
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QPI50621
LinkDB
All DBs
Position
complement(718376..720466)
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AA seq
696 aa
AA seq
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MNLFFEESGDFKVGTVLSQAGEAYQVEMPSGKRTKVKVKDVLLQYEKPSAAELLEAAKAV
AADVDFEFLWEVAGQEEFGFAELGAEYFGHAPLPSEAAGLILALHGAPIYFYKKGRGRYK
AAPEASLRAAQAGIEKKKQQGVIQAGYVDELKANRLPDSMRPLVQQLLFKPDKNSIEFKA
LDAACNELHTTPPRLMLAAGGIASPKQLHMARFLFENFPRGSGFPAVTVPAAPANLPLAA
VAAFSIDDVTTTEIDDAFSVVTLADGMVQVGIHIAAPGLGIRPDDPIDKMARARMSTVYM
PGDKITMLPDELVARFTLAEGKTCPAVSLYATIDPADWSVKSTVTRAELVPIKSNLRNND
LDEVVSEEALAAGTGEYPHKAEMAVLWQWALTLEAARMVKREGFGLKPEQNNRVDFNFYV
EDDVVTVLRRKRGAPLDKIVAELMIFANSTWGKLMHDSGVPGIYRSQGAGSGAGWAAKMQ
VRMVTHAAPHQGLGVDQYAWSTSPLRRYTDLVNQWQILACAEHGVTAPLVAPFKPRDANL
FAIVSAFDAAYAAYNDHQQNMERYWCLRWLGQQDRRQVEAVVLKDEVLRLADIPLIVRLP
GMPQVARGAQVKLDILRWDELDLTIEARLLELPSSTEIAADADLDYEEEEPASATASATA
PATASATAPDTGEAAVSEAVEAEGSVTVVTSEPTAG
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgaatctattttttgaagaatccggcgatttcaaggtcggcaccgtgttgtcgcaagcg
ggcgaggcttaccaggtcgaaatgccaagcggcaagcgcaccaaggtcaaggtcaaggac
gtgctgctgcagtacgaaaagccatccgccgccgagctgctggaagcggccaaggcggtc
gccgccgacgtcgatttcgagttcctgtgggaagtcgctgggcaagaagagttcggtttc
gccgagctgggcgccgagtatttcggccacgccccgctgccgtcggaagcggccggcctg
atcctggcgctgcacggcgcgccgatctatttctacaagaagggacgcggccgctacaag
gcggctccggaagcgtccctgcgcgcggcccaggccggcatcgagaaaaagaaacagcaa
ggcgtgatccaggccggctatgtggacgagctcaaggctaaccgcttgccggattccatg
cgcccgctggtgcagcaattgctgttcaagccggacaagaacagcatcgaattcaaggcg
ctcgacgccgcctgcaacgaattgcacaccacgccgccgcgtctgatgctggccgccggc
ggcatcgcatcgcccaagcaattgcacatggcgcgcttcctgttcgagaattttccgcgc
ggatcgggcttccccgccgtgacggtaccagccgcgccggccaatttgccgctggccgcc
gtggccgcgttctcgatcgatgacgtcaccaccaccgaaatcgacgatgccttctcggtc
gtgaccctggcggacggcatggtgcaggtcggcatccacattgccgcgccgggcctgggc
atccgtcccgacgatccgatcgacaaaatggcgcgcgcgcgcatgtcgaccgtctacatg
ccgggcgacaaaatcaccatgctgccggatgaactggtggcgaggttcaccctggccgaa
ggcaagacttgcccggcggtgtccttgtacgccaccatcgacccggccgactggagcgtg
aagtcgaccgtgacccgcgccgaactggtgccgatcaagagtaatctgcgcaacaacgac
ctggacgaggtagtcagcgaagaagccctggctgccggcaccggcgagtatccgcacaag
gccgagatggctgtgctgtggcagtgggcgctcaccctggaagcggcgcgcatggtcaag
cgcgaaggtttcggcctgaaacccgagcaaaacaaccgggtcgacttcaatttctatgtg
gaagacgacgtggtcacggtgctgcggcgcaagcgcggcgcgccgctcgacaagatcgtg
gccgagctgatgatcttcgccaacagcacctggggcaagctgatgcacgactcgggtgtg
ccgggtatttaccgctcgcaaggcgccggtagcggcgccggctgggccgccaagatgcag
gtgcgcatggtcacccatgccgccccgcaccagggcctgggcgtggaccagtacgcatgg
agcacctcgccattgcgccgctataccgacctggtcaaccagtggcagatcctcgcttgc
gccgagcacggcgtgacggccccgctggtggccccgttcaagccgcgcgacgccaacctg
ttcgccatcgtctcggcgttcgacgcggcgtatgccgcctacaacgatcaccagcagaat
atggagcgctactggtgcctgcgctggctcggccagcaagaccgccgccaggtcgaagcg
gtggtgctcaaggatgaagtgttgcgtctggccgacattccgctgattgtccgcctgccc
ggcatgccgcaagtggcgcgcggggcgcaggtcaaactcgacatcctgcgttgggacgag
ctcgatttgacgatcgaagcgcgcctgctggagctgccgtcgagcaccgagatcgccgcc
gatgccgacctcgactacgaggaagaggagccagcgtcggctaccgcgtcggctaccgcg
ccggctaccgcgtcggctaccgcgccggacaccggtgaagcagcggtgtccgaagcagtg
gaagccgagggttcggtaacggtggttaccagcgagccgacagccggctga
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