Massilia antarctica: IV454_04560
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Entry
IV454_04560 CDS
T08186
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
manc
Massilia antarctica
Pathway
manc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
manc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IV454_04560 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manc03019
]
IV454_04560 (pcnB)
Enzymes [BR:
manc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
IV454_04560 (pcnB)
Messenger RNA biogenesis [BR:
manc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IV454_04560 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
DUF2204
Motif
Other DBs
NCBI-ProteinID:
QPI50843
LinkDB
All DBs
Position
1007836..1009230
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AA seq
464 aa
AA seq
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MIKKFIRKMLGVKEKQPVRDLTEPIVLGPAEHGIDPKLLSSNAIRVTQTLQEAGFKAFVV
GGAVRDLLLSVKPKDFDIATDATPEQVKRLFRRAFIIGKRFQIVHVMFGSDLLEVTTFRG
AGESNAPKDEHGRVLRDNNFGPQHEDAMRRDFTINAMYYDPATQVVLDYHGGIADIRDKT
LRIIGQPEARYREDPVRLLRVVRFAARLGFTIEPHTREPIPVMAPLINNVPAARVFDEML
KLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPIGMKFVTLALESTDNRIKAGKGVSP
GFLFASLLWHQVVEKWTAYRAAGESPIPALHLAADDVLDSQTEKLALQRKIGSDMRDIWS
MQPRFERRNGKAPYKLLEHPRFRAGYDFLLLRCESGEIEMEIGEWWTAFYEGDAVERETL
LTTAGAAPSGAKRKRPPRRAPRNRAGGEGGDTTTSTTGSTSGDE
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgattaaaaaattcatccgcaaaatgctcggcgtcaaagagaagcagccagtgcgcgac
ctgaccgaacccatcgtcctgggaccggcggaacacggaatcgatcccaagctgctgtcg
tcgaacgcgatccgcgtgacccagacattgcaggaggcgggcttcaaggcgttcgtggtg
ggcggcgccgtgcgcgacctgctgctgtcggtcaagccgaaggacttcgacatcgccacc
gacgccacgccagaacaggtcaagcgcctgttccggcgtgccttcatcatcggcaagcgc
ttccagatcgtgcacgtgatgttcggctccgacctgctggaggtcaccaccttccgcggc
gccggcgagtccaacgctcccaaggatgaacacggacgggtcctgcgcgacaataatttc
ggtccccagcacgaagacgccatgcggcgcgacttcaccatcaacgccatgtactacgac
ccggccacgcaagtggtgctggactaccatggcggcatcgccgacatccgcgacaagacc
ctgcgtatcatcggccagccggaagcgcgctaccgcgaagacccggtgcgcctgttgcgc
gtggtgcgcttcgccgcgcgcctcggttttaccatcgagccgcacacgcgcgaaccgatt
cccgtcatggcgcccttgatcaacaacgtgccggccgcgcgcgtgttcgacgaaatgctc
aagctgctcatgagcggccacgcgctggcctgcctgcagcagctgcgcaaggaaggcctg
catcacggcctgctgccgctgctcgacgtggtgctggagcagccgatcggcatgaagttc
gtcaccctggcgctcgaatcgaccgacaaccgcatcaaggctggcaagggcgtctcgccg
ggcttcctgtttgcgtcgctgctgtggcaccaggtggtggaaaaatggaccgcctaccgc
gcggcgggcgagtcgccgattccggcgctgcacttggcggccgacgacgtgctcgattcg
cagaccgaaaaactggccctgcagcgcaagatcggctcggacatgcgcgatatctggtcg
atgcagccgcgcttcgagcggcgcaacggcaaggccccgtacaagctgctggaacacccg
cgcttccgcgccggctacgacttcctgctgctgcgctgcgagtcgggcgagatcgagatg
gagatcggcgaatggtggaccgctttctatgaaggcgacgccgtcgaacgcgaaaccctg
ctcaccaccgccggcgccgcaccaagcggcgccaagcgcaagcgcccgccgcgccgcgcg
ccgcgcaaccgtgccggtggcgaaggcggcgacaccaccaccagcaccaccggcagcacc
agcggcgacgaatga
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