Massilia antarctica: IV454_12260
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Entry
IV454_12260 CDS
T08186
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K14414
transcriptional regulatory protein RtcR
Organism
manc
Massilia antarctica
Brite
KEGG Orthology (KO) [BR:
manc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
manc03000
]
IV454_12260
Transcription factors [BR:
manc03000
]
Prokaryotic type
Other transcription factors
Others
IV454_12260
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
Mg_chelatase
AAA_5
AAA
NACHT
AAA_16
AAA_22
AAA_14
AAA_7
AAA_2
LPD39
MCM
ABC_tran
AAA_30
AAA_3
ATPase_2
BrxC_BrxD
AAA_29
T2SSE
Motif
Other DBs
NCBI-ProteinID:
QPI52197
LinkDB
All DBs
Position
complement(2711583..2713193)
Genome browser
AA seq
536 aa
AA seq
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MKQKRIVVIGFVGTQLDSGKGAARWEKWRPSIAITQHEEYAVDRFEMLFSGKFGPLVDAV
TADIAAVSPETTVVPHHIAISDAWDFGEVYGALFDFAKTYPFDPDNEDYWIHITTGTHVV
QICMFLMTEARFFPGRLLQSSPPRRQSTTEPGSYALIDLDLSRYDQIAQRFSREQAEGVA
FLKSGIATRNTSFNTMIDEIERVAIKSRAPMLLMGPTGAGKSFLARRIYELKKTRHQLDG
KFVELNCATLHGDGAASTLFGHVKGSFTGAAADRPGLLRSAHKGLLFLDEIGELGPDEQA
MLLKAIEEKRFHPVGSDSEVQSDFQLIAGTNRDLASEVVAGRFREDLYARINLWTYALPG
LVDRPEDIEPNLVYQLNQFSQEYGQMVRFNKEARERYMRFAMSPEAVWAGNFRDLSASVT
RMATLAEAGGISDSIVGAEVARLQKLWQHYTRAPSAAEVDLAELMGDEAAAGLDLFDAIQ
LAAVVKVCRQSTTLSDAGRKLFAVSRNAKSKPNDADRLKKFLARFSLEWGQVCGKS
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaaacgcatcgtagtcatcggtttcgtcggcacccagctcgacagtggcaaa
ggcgcggcgcgctgggaaaagtggcgccccagcatcgccattacccagcacgaggaatac
gcggtcgaccgcttcgagatgctcttcagcggcaaattcggcccgctggtcgacgcggtc
acggccgacatcgccgccgtctcgcccgaaaccacggtcgtcccgcaccacattgcgatc
agcgacgcttgggatttcggcgaggtctacggcgccctgttcgacttcgccaagacctac
cccttcgacccggataacgaggattactggatccacatcaccaccggcacccacgtcgtg
cagatctgcatgttcctgatgaccgaagcgcgcttcttccccggccgcctgctgcaaagc
tcgccgccgcggcgccagtcgaccaccgaaccgggcagctacgcgctgatcgacctcgac
ctgtcgcgctacgaccagatcgcccagcgcttttcgcgcgagcaagccgaaggcgtggcc
ttcctgaaatccggcatcgccacccgcaacaccagcttcaacaccatgatcgatgagatc
gagagggtcgccatcaagtcgcgcgcgcccatgctgctgatgggcccgaccggcgccggc
aagtccttcctggcgcgccgcatctacgaattgaagaagacgcgccaccagctcgacggc
aaattcgtcgagctcaactgcgccaccctgcacggcgatggcgccgcctcgaccctgttc
ggccacgtcaaaggttccttcacgggcgccgccgccgaccgcccgggcttgctgcgcagt
gcccacaagggcttgctgttcctcgacgaaatcggcgaactcggtccggatgaacaggcg
atgctgctcaaagccatcgaggaaaagcgctttcatccggtcggcagcgacagcgaagtg
cagagcgacttccagctgatcgccggcaccaaccgcgatctcgccagcgaggtggtggcc
gggcgcttccgcgaagacttgtacgcccgcatcaatttatggacttacgccctgcccggc
ctggtcgaccggcccgaagacatcgagcccaacctggtctaccagttgaaccagttcagc
caggaatacggccagatggtgcgtttcaacaaggaagcgcgcgaacgctacatgcgcttc
gcgatgtcgcccgaggccgtctgggccggcaacttccgcgacctgtcggcctcggtgacc
aggatggccacgctggccgaggccggcggcatttccgacagcatcgtcggcgccgaagtg
gcccgcctgcaaaaactgtggcagcactacacgcgcgccccaagcgcggccgaggtcgac
ctggcggaactgatgggtgacgaagcagccgccggcctcgacctgttcgatgccatccaa
ctggccgccgtggtcaaggtatgccgccagtcgaccaccttgtccgatgccggacgcaag
ctgtttgccgtctcgcgcaacgccaagagcaaacccaacgacgccgaccgcctgaagaaa
ttcctggcgcgtttttccctggaatggggccaggtttgcggcaaatcgtag
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