Massilia antarctica: IV454_12270
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Entry
IV454_12270 CDS
T08186
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
manc
Massilia antarctica
Brite
KEGG Orthology (KO) [BR:
manc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
manc03016
]
IV454_12270
Enzymes [BR:
manc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IV454_12270
Transfer RNA biogenesis [BR:
manc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IV454_12270
Prokaryotic type
tRNA splicing ligases
IV454_12270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QPI52199
UniProt:
A0AA48WIF5
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All DBs
Position
2715577..2716812
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AA seq
411 aa
AA seq
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MKNENYDVLNVEDGRHVKMWTKGVPVEDVAKKQLANTAKMPFIYKHIAVMPDVHLGKGST
IGSVIPTLGAVIPAAVGVDIGCGMMAAKTTLTANDLPDNLSALRSAIERAIPHGMSPKTR
GFRGRDEGSWNTPPAAVDVAWGQLKDEFDAICLKTPKLKTTNNYRHLGTLGSGNHFVEVC
LDEVGFVWFMLHSGSRGVGNAIGTHFIELAKKDMRTHFINLPDQDLAYLAEGTQHYNDYI
QAVSWAQKFARTNRDVMMQNLITAVRTVITKPFETHVEAVNCHHNYVEKEHHFGKDVLIT
RKGAVSARPGELGIIPGSMGAKSFIVRGKGNPDSFNSCSHGAGRTMSRTEAKRRYTLDDQ
IKATEGVECRKDENVIDEIPMAYKDIDAVMHAQRDLVEVVHILKQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacgaaaattacgatgtcctgaacgtggaagatggccgccatgtcaaaatgtgg
accaaaggcgttccggtggaggacgtggccaagaagcagctggccaataccgccaagatg
cccttcatttacaagcatatcgcggtcatgccggacgtccacctgggtaagggttcgacc
atcggcagcgtgatcccgaccctgggtgcggtgattccggcggcggtgggcgtggatatc
ggttgcggcatgatggcggccaagaccaccctgacggcaaacgacctgccggataacctg
tccgcgctgcgtagcgccatcgagcgtgcgatcccgcatggtatgtcgccgaaaacgcgc
ggcttccgtggccgcgatgaaggttcgtggaatacgccgcctgcggctgtcgacgtggcc
tggggccagttgaaggatgaattcgacgccatttgcctgaaaacgccgaagctgaaaacc
acgaataactatcgtcacctcggtaccttgggtagcggtaaccacttcgttgaggtgtgc
ctggacgaggtgggttttgtgtggttcatgctgcattcgggttcgcgcggcgtggggaat
gccatcggcacccacttcatcgaactggccaagaaggatatgcgcacgcacttcatcaac
ctgcccgatcaggatctagcctacctggcggaaggtacgcagcactataacgattacatc
caggcagtcagctgggcgcagaaatttgcgcgcaccaatcgcgatgtgatgatgcagaac
ctgatcacggcggtgcgtaccgtgatcaccaagccgttcgagacgcacgtggaagcggtg
aactgccaccataattatgtggagaaggagcatcacttcggtaaggatgtgctgattacc
cgtaagggcgccgtgtcggcccgtccgggcgagctgggaattatcccggggtcgatggga
gcgaagagtttcatcgtgcgcggaaaagggaatccggacagcttcaacagctgcagccac
ggtgccggccgcaccatgagccgtaccgaagcgaagcgccgctacacgctcgatgaccag
atcaaggccaccgagggcgtggagtgccgcaaggatgaaaatgtgattgacgagattccg
atggcgtacaaggatatcgacgcggtcatgcacgcccagcgcgatctggtggaggtggtc
catatcctcaagcaggtggtgtgcgtcaaaggttga
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