Massilia antarctica: IV454_17765
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Entry
IV454_17765 CDS
T08186
Name
(GenBank) RICIN domain-containing protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
manc
Massilia antarctica
Pathway
manc00040
Pentose and glucuronate interconversions
manc01100
Metabolic pathways
manc02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
manc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
IV454_17765
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
IV454_17765
Enzymes [BR:
manc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
IV454_17765
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Gene cluster
GFIT
Motif
Pfam:
RicinB_lectin_2
Pectate_lyase_4
Ricin_B_lectin
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
QPI47461
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Position
complement(3940321..3941934)
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AA seq
537 aa
AA seq
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MTAFPVADALNRPLPARRLATLAASLAIPLSLMANPASAANCNAAVYNGGLYTVVNASTG
KVLDVVAGSTKGAAEVQQWGSANSSNQQFYLRDAGNGYWTMQAKHSGLLLDVLNLSVNDG
AKIIQWNATGAQNQQWLLKKSTGGGYNVVARHSGKSLTVANNDSGSRVYQATDTGNGIQR
WYFNPTNGSCGGPAADGFAAQSGADGLGTTTGGGNSAPVTVTSCSALSSALRASGPAVIQ
IPGGTTIDCRTAVRSESTCAVACPTYQDPGKSTYRVPVGTMTCKELGSTSETRYMRPRDE
TNIWVASDKTLVGLNKDARLIGASLIVSGTKNVIIRNLNIENINPGLVEAGDGITITKSS
HVWVDHVHFNLISDGHVDIQDSKNVTLSWNRFDGTNPAVCGNQHHYTNAFSNSQVTLHHN
FWNKTSGRNPKLLGAASRTHLYNNYWLDVPYFAIGASDHAQVKVEGNFFANTARPHWNED
NALIDANIASDRYTGKSENDVEKDTGAKVFGDTVLFPYKLDNVDDLPAVLTNGTGAR
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcattccccgttgccgacgcgctgaaccgtccgcttcccgcacgacgcctggcc
accctggccgcatcgctggccattcccttgtccctgatggccaatcccgccagcgccgcc
aattgcaacgccgccgtgtacaacggcggtttgtacaccgtcgtcaacgcttccaccggc
aaagtgctcgacgtcgtggccggctccaccaagggtgcggccgaagtccagcaatggggt
tccgcaaacagcagcaaccagcaattctatctgcgcgacgccggcaacggttactggacc
atgcaagccaagcacagcggcctgctgctcgacgtcctgaacctgtcggtcaacgacggc
gccaaaatcatccagtggaatgccacgggcgcccagaaccagcaatggctgctgaaaaaa
tcgaccggcggcggctacaacgtcgtcgcccgccattcgggcaagtcgctcaccgtggcc
aataacgacagcggctcgcgcgtctaccaggccaccgataccggcaacggcatccagcgc
tggtacttcaacccgaccaacggttcctgcggcggcccggccgcggacggcttcgcggcc
cagtccggcgctgacggcttgggcaccaccaccggcggcggcaacagcgcgcccgtcacc
gtcacctcgtgcagcgccctgtccagcgccctgcgcgcgagcggccccgccgtgatccag
attccgggcggcaccaccatcgattgccgcaccgccgtgcgttcggaaagcacctgcgcg
gtcgcctgcccgacctatcaggatccgggcaagagcacctaccgcgttccggtcggcacc
atgacctgcaaggaactcggctcgaccagcgaaacgcgttacatgcgcccgcgcgatgaa
accaatatctgggtcgcttccgacaaaaccctggtcggcctgaacaaggatgcacgcctc
atcggcgcctcgctcatcgtgagcggcaccaagaacgtcatcatccgcaacctgaacatc
gaaaacatcaaccccggcctggtcgaagcgggcgacggcatcaccatcactaagtcgagc
catgtgtgggtcgaccatgtgcactttaacctgatcagcgacggccacgtcgacatccag
gacagcaagaacgtgaccctgagctggaaccgtttcgacggcaccaacccagccgtgtgc
ggcaaccagcaccactacaccaatgccttcagcaactcgcaggtcaccttgcaccataac
ttctggaacaaaacctccggccgcaatccgaagctcctgggcgcggcttcccgtacccac
ctgtacaacaactactggctcgacgtgccctacttcgccatcggcgccagcgaccacgct
caagtgaaggtcgaaggaaacttctttgcgaacacggccaggccgcattggaacgaagac
aatgcgctgatcgacgccaacatcgcctcggaccgctacaccggcaagtcggaaaacgat
gtggagaaggataccggcgccaaggtgttcggcgacaccgtactgttcccgtacaagctg
gacaacgtcgacgacctgccggccgtcctcaccaacggtaccggcgcacgctga
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