Massilia antarctica: IV454_31235
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Entry
IV454_31235 CDS
T08186
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
manc
Massilia antarctica
Brite
KEGG Orthology (KO) [BR:
manc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
manc03009
]
IV454_31235 (rlmD)
Enzymes [BR:
manc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
IV454_31235 (rlmD)
Ribosome biogenesis [BR:
manc03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
IV454_31235 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
RrnaAD
MTS
Methyltransf_32
Cons_hypoth95
Methyltransf_11
UPF0020
TRAM
PCMT
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
QPI49834
LinkDB
All DBs
Position
complement(7108459..7109799)
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AA seq
446 aa
AA seq
DB search
MQDTILDIKSLDMDARGVGHLANEDGSPGKVIFVEGALPGEKVSFYTFKKKKNWEAARMT
VLHKPSSMRVEPKCPHFDNCGGCSMQHLEPSAQVAMKQRVLEDNLWHIGKVKPENVMRPM
YGPTWGYRYRARLSVRHVAKKDTVLVGFHEKRSAFVADMSDCKILPPHVAAMLLPLRALV
GALSIFDQMPQIEIAVGEETTAMVLRIMAPLTAADETLLKSFADQWQIQWWLQTKGPETA
APFYPLDKELYYTLPEFGVKMPFKPVDFTQVNHHINRVLVGKALNLLDVQPDDRVADLFC
GLGNFTLPLATQGREVVGIEGSTTLTERALSNARANGLSEKTSFSTRNLFEVTAEDLVAL
GKFDRMLIDPPRDGAMALVQALAALRLSHPQMLPKRIVYVSCSPSTLARDAGILTHEAGY
QLKKAGVVNMFPHTSHVESMAVFDLA
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacaccattctcgacatcaaatccctggacatggacgcccgcggcgtcggccac
ctcgccaacgaggacggttcgccgggtaaggtcatcttcgtcgagggcgccttgccgggc
gaaaaagtcagtttttataccttcaagaaaaagaaaaactgggaagcggcgcgcatgacg
gtgctgcacaagccctcgtcgatgcgggtcgagccgaaatgcccgcatttcgacaattgc
ggcggctgctcgatgcagcacctggagccctcggcccaggtggcgatgaagcagcgtgtg
ctggaagataatctgtggcacatcggcaaggtcaagccggaaaacgtgatgcgcccgatg
tacggcccgacctggggctaccgctaccgcgcgcgcctgtcggtgcgtcatgttgccaaa
aaagatacggtgctggtcggtttccatgaaaagcgctcggccttcgtcgccgacatgagc
gactgcaagatcctgccgccgcacgtggccgccatgctgctgccgctgcgcgcgctggtg
ggcgccctgtcgatcttcgaccagatgccgcagatcgaaatcgcggtcggcgaggaaacc
acggccatggtgctgcgcatcatggcgcccctgacggctgccgatgaaaccttgctcaag
agctttgccgaccagtggcagatccagtggtggctgcagaccaagggcccggaaacggcc
gcgccgttctatccgctcgacaaggaactgtattacaccttgcccgaatttggcgtgaag
atgccgttcaagccggtcgactttacccaggtcaaccatcacatcaaccgggtgctggtc
ggaaaagcactcaatctgctggatgtgcagccggatgacagggtagccgacctgttctgc
ggcctgggcaacttcaccttgcctctggccacccagggcagggaagtggtcggcatcgaa
ggcagcaccaccctgaccgagcgggcgctatcgaatgcgcgcgcgaatggcttgtcggaa
aaaaccagcttttcgacgcgcaatctgttcgaggtgacggcggaagacctggtcgcgctc
ggcaagttcgaccgcatgctgatcgatcctccgcgcgacggcgccatggcgctggtgcaa
gccctggccgccctgcgcctgagccatccgcagatgctgcccaagcgcatcgtgtacgtc
tcctgcagcccgtccaccctggcgcgcgatgccggcatcctgacccacgaggcgggctac
cagctgaaaaaggcgggtgtggtgaacatgttcccgcatacctcgcacgtggaatcgatg
gccgtgttcgacctggcctga
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