Mangrovimonas sp. YM274: RBH95_05880
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Entry
RBH95_05880 CDS
T09317
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mang
Mangrovimonas sp. YM274
Pathway
mang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBH95_05880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mang03019
]
RBH95_05880
03400 DNA repair and recombination proteins [BR:
mang03400
]
RBH95_05880
Enzymes [BR:
mang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBH95_05880
Messenger RNA biogenesis [BR:
mang03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBH95_05880
DNA repair and recombination proteins [BR:
mang03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RBH95_05880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecQ-1-like_HTH
DEAD
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
DUF6761
Motif
Other DBs
NCBI-ProteinID:
WMI69875
LinkDB
All DBs
Position
1336041..1338242
Genome browser
AA seq
733 aa
AA seq
DB search
MSIKEIDLHSALKQYFGFSKFKGLQEPVIQSIVDGHNTFVIMPTGGGKSLCYQLPALIKE
GTAIIVSPLIALMKNQVDAIRGISDNEGIAHVLNSSLNKTEVRRVKSDISSGITKLLYVA
PESLTKEDNVEFLRSVPISFMAVDEAHCISEWGHDFRPEYRNLRHIIKRIGENIPIIGLT
ATATPKVQEDILKSLDITDANLFKASFNRPNLYYEVRPKTKQVDADIIRFIKQNEGKSGI
VYCLSRKRVEELAQVLQVNGIKAVPYHAGLDPKTRVKHQDMFLMEDVDVVVATIAFGMGI
DKPDVRFVIHHDMPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFMAGKPVAEQ
EIGHALLQEVVAFAESSVSRRKFILHYFGEEFDNATGEGGDMDDNVRHPKKQHEAQDDVV
TILETVQKTNEKYKAKDLVQVLLGRSNALIASHKTDEQPFFGIGSHHDKRYWMALIRQLL
VAGYLKKDIETYGVMRLSKEGKAYLKDPISFMMTEDHVFDETTDDSIVTTAKSSAAVADA
NLMGMLKDLRKRNAKKLGVPPFVIFQDPSLEDMALKYPMTIEELSYVHGVGEGKAKKYGK
DFIELIARYVEENDIIRPDDMVVKSTGTNSALKLFIIQNVDRKLPLDDIAASKGMNMGEF
IKEMEAIVYSGTKLNIDYWIDEILDEDQQEEIHEYFMDSETDKISDAIEEFDGDYDDEEL
RLYRIKFISEVAN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcaaagaaattgacttgcattcagcacttaagcagtactttgggttttcaaaa
ttcaaggggttgcaagagcctgtaattcaaagtattgttgatggccataatacctttgtg
attatgcctacgggtggcgggaagtcgttatgctatcaacttccagctttgatcaaggag
ggaacagctattattgtatcgccattaattgcgttaatgaagaaccaagttgacgctatt
agggggatttcggataatgaaggcatcgcacatgtgttgaattcatcacttaacaaaaca
gaagttcgccgcgtaaaatcggatatttcaagcggtattaccaaattattatatgtagcg
ccagagtcgttgaccaaggaagataacgtagagtttttacgctcggtacctatttccttt
atggcggtagatgaagcccactgtatcagtgagtggggacatgactttagacctgaatac
cgtaatttaaggcacattattaaacgtattggggaaaatattcccattatagggttgacc
gctacggctacaccaaaggttcaggaagatatcctgaaaagtttagacattacggatgct
aatttatttaaagcttcctttaatcgtccaaacttgtattatgaagtacgccccaagacc
aaacaagtggatgcggatatcattcggtttatcaaacagaacgaaggtaaatcggggatt
gtgtattgtttgagtagaaagcgtgtggaagaattggcccaggtgcttcaggtaaatggt
attaaagcggtgccgtatcatgcggggcttgatcctaagacaagggtaaaacaccaggac
atgttcttgatggaagatgtggatgtggttgtggctaccattgcttttggaatggggatt
gacaaaccagatgtgcgttttgtgatccaccatgacatgccaaaaagtattgaaagttat
tatcaggaaactggtagggcaggacgtgatggtggcgaaggtcattgtttggcgttttat
gcctataaggatattgaaaaactagaaaagttcatggccggaaagccggtggctgaacag
gaaattggacacgctctattgcaagaggtcgttgcctttgcggaaagttcggtgtcgcgc
cgtaaattcattctacattattttggtgaagaatttgataatgccacgggtgagggaggt
gatatggatgataatgtacgccatccgaagaaacaacacgaagcccaagatgatgtggtg
accattttggaaacggttcaaaaaactaatgaaaaatataaggccaaggatttagttcaa
gttttgttagggcgttccaatgccttgattgcttcgcataaaacggatgaacagcccttt
tttggaattggtagccatcacgataaacgctattggatggctttgatacgtcagttgttg
gtggcaggatatttaaagaaagacatcgaaacttatggggtaatgcgtttgtcaaaagaa
gggaaggcgtatttaaaggaccctatctcctttatgatgactgaagaccatgtgtttgat
gagactaccgatgatagcattgtaactacggctaaatcgagtgccgctgttgctgatgcc
aatttaatgggaatgcttaaggacttgcgtaagcgcaacgcaaagaaattgggcgtgccg
ccttttgtgattttccaagatccttctttggaggatatggcccttaaatatcctatgact
attgaagagctgagctatgttcatggggtaggagaaggaaaggctaaaaaatatgggaaa
gattttatcgagttgattgcccgttatgtggaggaaaacgatatcatccgtcctgacgat
atggtggtgaaaagtacaggaaccaattcagccttaaaactttttatcattcaaaacgtg
gatagaaagttgccattggatgacattgcggcttccaaaggcatgaatatgggggagttt
atcaaggagatggaagccattgtgtattcggggacgaaactgaacatcgactattggatt
gatgaaattttggatgaagaccagcaggaggaaatccatgagtactttatggattctgaa
accgataaaatctccgacgccatcgaggagtttgatggagattacgacgatgaggaatta
cgactgtatcgtattaagtttatcagtgaggtagctaattaa
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