Mangrovimonas sp. YM274: RBH95_09785
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Entry
RBH95_09785 CDS
T09317
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mang
Mangrovimonas sp. YM274
Brite
KEGG Orthology (KO) [BR:
mang00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mang03009
]
RBH95_09785 (rlmD)
Enzymes [BR:
mang01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RBH95_09785 (rlmD)
Ribosome biogenesis [BR:
mang03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RBH95_09785 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
MTS
Methyltransf_15
Cons_hypoth95
PrmA
Methyltransf_11
TRAM
FtsJ
PCMT
UPF0020
Methyltrans_SAM
Methyltransf_12
RrnaAD
N6_N4_Mtase
DUF5590
Motif
Other DBs
NCBI-ProteinID:
WMI67435
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Position
2279478..2280893
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AA seq
471 aa
AA seq
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MSRRNKKQVFTNVEVIDAGAKGKLVAKAPDGKVIFLSNAVPGDVVDIQTYKKRKAYYEGK
AIAFHSLSEKRTEPKCEHFGVCGGCKWQDMDYQYQLEYKHKEVENNLRRIGHVELPEITP
ILGSSEQYFYRNKMEFSFSDSRWLTQEEIQSGEDLGDKNALGFHIPGMWDKILDVKKCWL
QGDPSNAIRNEVKSFAIANDMEFFNTRNQAGFLRSLMIRTSTTGDLMVMIQFFKEDKAKR
ELLLDHLAETFPEISSLQYVINGKANDTIYDQEVICYKGDNHIFEQMEDLRFKINAKSFY
QTNSKQAYELYKIARDFADLKGDELVYDLYTGTGTIAQFVAKKAKKVVGVEAVPDAITAA
KENAQLNGIDNVDFYVGDMKNVFNDAFISQHGHPDVIITDPPRDGMHKDVVQQILNIAPE
KVVYVSCNSATQARDLALMDDAYKVTKVQAVDMFPQTYHVENVVLLERRNL
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagaagaaacaaaaagcaggtatttaccaacgttgaagtgatagatgccggggcc
aaaggcaaattggttgccaaagcgccagacggtaaagtaatttttttgtcgaatgccgta
ccaggtgatgtagtagacattcaaacctacaaaaagcgcaaggcctattacgaaggcaaa
gccattgcgtttcattccttatccgaaaagcgcacggaacccaaatgcgaacattttgga
gtttgtggtggttgtaaatggcaggatatggattaccaataccaattggaatacaaacac
aaagaagttgaaaacaacctaagacgcattggccatgtagaacttcccgaaatcactcct
attttaggatcttcggaacagtatttctataggaacaaaatggaattttcctttagcgac
agcagatggctaacacaggaagaaatccaatctggtgaagatttgggcgacaagaatgct
ctgggctttcatattccaggaatgtgggacaaaattttggacgtcaaaaaatgttggttg
cagggagatccttccaatgccattcgcaatgaggtaaaatcctttgccattgccaatgat
atggaatttttcaacactcgtaaccaagctggatttttgcgttccctcatgatacgcact
tccacaacgggagaccttatggtaatgatccagttctttaaggaagataaagcaaaacga
gaattattactggatcatttggctgaaaccttccctgaaatttcctctttgcaatacgtt
atcaacggaaaagcaaatgacaccatttatgatcaggaggtgatttgctacaaaggagac
aaccatatttttgaacagatggaagacctaaggttcaaaatcaatgcaaaatccttttac
caaaccaattccaaacaagcctatgaactctacaaaattgcacgtgattttgccgattta
aaaggagacgaattggtatacgatttgtatacaggaacaggtaccattgcgcaatttgta
gcaaaaaaagccaaaaaggtagtcggtgtagaagccgttccagatgctattaccgctgcc
aaggaaaatgcacaattaaacggtattgataacgttgacttctatgtgggtgatatgaaa
aatgtattcaacgatgccttcattagccagcatggacatccagatgtcattattacagat
ccacctcgtgacggtatgcacaaggatgtggttcagcaaatattgaatattgctccagaa
aaagttgtttatgtaagctgtaacagtgcaactcaagccagagatttggcacttatggat
gacgcttacaaagttaccaaagtacaagctgtagacatgttcccgcaaacctaccatgta
gaaaatgttgtacttttagaacgtcgaaacctctaa
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