Mangrovimonas sp. YM274: RBH95_11095
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Entry
RBH95_11095 CDS
T09317
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mang
Mangrovimonas sp. YM274
Pathway
mang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBH95_11095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mang03019
]
RBH95_11095
03009 Ribosome biogenesis [BR:
mang03009
]
RBH95_11095
Enzymes [BR:
mang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RBH95_11095
Messenger RNA biogenesis [BR:
mang03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBH95_11095
Ribosome biogenesis [BR:
mang03009
]
Prokaryotic type
rRNA helicases
RBH95_11095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WMI67685
LinkDB
All DBs
Position
2578983..2580767
Genome browser
AA seq
594 aa
AA seq
DB search
MNTFQDLGLNDDLLHAINDLGFETPSDVQAQAIPILIEEDTDLVALAQTGTGKTAAFGFP
MLQKIDVGSRTTQGLILSPTRELCLQITNELKLYGKYCKGLNVVAIYGGSSISDQARAIK
KGAQIIVATPGRMKDMISRNMVDISKIEYSVLDEADEMLNMGFYEDITDILSHTPTDKST
WLFSATMPREVASIAKEFMYDPKEITVGSKNVGSDQVSHEYYLVNSRDRYQALKRLADAN
PDIFSVVFCRTKRDTQKVAENLIEDGYNAGALHGDLSQNQRDLVMKSFRNKQIQMLVATD
VAARGIDVDDVTHVINYQLPDEVETYTHRSGRTGRAGKTGVSMVIVSKSELRKIKSIERI
IKKRFEKKDIPSGMEICEVQLLSLANKVHNTEVNHEIDKYLSSINELFKDTDKDELIKKF
FSVEFNRFFNYYKKAHSLNVEEPRGDREGKRSSSNDVRYFINIGKKDGYDWMNLKDFLRD
LLELGKDDVFKVDVMDSFSFFNTEPELQEKILSFFTDFKHEGRYVNVELSSDKGNRGGKR
RKGGRRDGGGRRRSNDDFKGGNSRKRSESGSKPRRSGGQKANTVAGSRPRRSRR
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgaacacattccaagatttaggtcttaatgacgacctattgcatgctattaatgattta
ggatttgaaactcctagtgacgtacaagcgcaagccatccctattttaattgaagaagac
accgatttggtggccttggcacaaaccggaacaggaaaaacagccgctttcggatttcca
atgttacaaaaaatagatgtgggaagcagaacaacacaagggcttatcttatcgccaaca
cgtgaactttgtctacaaatcaccaatgagcttaaactttatggaaagtactgcaaaggc
ttaaatgtagtcgctatctatggtggttctagtattagcgatcaagcaagagctatcaaa
aaaggggcgcaaattattgtagccactcctggtagaatgaaagacatgattagccgtaac
atggtggatatttcaaaaattgaatattctgttctggatgaggccgatgaaatgttgaac
atgggattctatgaagacattacagacattctatctcatacaccaacagataaaagcaca
tggttgttttcggctaccatgccaagagaagtagcatctattgccaaagaattcatgtat
gatccaaaggaaatcactgttggatctaaaaatgtaggtagtgaccaagtatctcacgag
tactatttagtaaactcaagagaccgctaccaagccttaaaacgtttggctgatgccaat
cctgatatcttttcagtggtattctgtcgtactaagcgcgatacgcaaaaagtagccgag
aaccttattgaggacggttacaatgcaggagcacttcacggagatttaagccaaaatcaa
agagatttggtaatgaaatccttcagaaacaagcaaatccaaatgttggtagctaccgat
gtagctgctcgtggtattgatgtagatgatgtgacccacgtgatcaactaccaacttccg
gatgaagtagaaacctacacccaccgttctggacgtacaggtcgtgcaggaaaaactggg
gtttctatggtgattgtttccaaaagtgaactgagaaaaatcaaaagtatcgagcgtatc
attaaaaaacgctttgagaaaaaagacattcctagtggtatggaaatttgcgaagtacaa
ttattatccttggcaaacaaagtccacaatacagaagtaaaccacgaaattgataaatac
ctaagcagtatcaacgaactttttaaggatacagacaaggatgaattaattaaaaaattc
ttctctgtagagtttaaccgcttcttcaactactacaaaaaagcccattccttaaatgtg
gaagaacctcgcggagatagagagggtaaacgctcatccagcaacgatgtccgctacttt
atcaatattggtaaaaaagatgggtatgactggatgaacttgaaggatttcttgagagac
cttcttgaattaggcaaagatgacgtctttaaggtagacgttatggacagcttctctttc
tttaacacagagccagaattacaagaaaaaatcctgagcttcttcacagactttaaacac
gaaggccgatacgttaatgttgagcttagctcggacaaaggaaaccgtggtggcaagaga
cgtaaaggtggtagacgcgacggcggaggaagaagaagaagcaatgacgactttaaagga
ggaaactcacgcaaaagatcggaaagcggttctaaaccaagacgcagcggaggacaaaaa
gctaataccgtagcaggttccagaccaagacgttctagacgctaa
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