Marinibacterium anthonyi: LA6_004380
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Entry
LA6_004380 CDS
T10601
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
manh Marinibacterium anthonyi
Pathway
manh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
manh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LA6_004380 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
manh03021
]
LA6_004380 (rpoC)
03400 DNA repair and recombination proteins [BR:
manh03400
]
LA6_004380 (rpoC)
Enzymes [BR:
manh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LA6_004380 (rpoC)
Transcription machinery [BR:
manh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LA6_004380 (rpoC)
DNA repair and recombination proteins [BR:
manh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LA6_004380 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
QEW22164
LinkDB
All DBs
Position
complement(4571394..4575635)
Genome browser
AA seq
1413 aa
AA seq
DB search
MNQEITNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMLTEEEFMDAQDAYGMDAFT
ANIGAEAIREMLAAIDLEAEAEQLRADLAEATGELKPKKIIKRLKVVESFLESGNRPEWM
VMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTVMREGMKGEGKIFGSMNEVEHAL
DAGEVHLHAKVTARITQIDEEGNEVEKRFETTPGRVKLGALLPLNAKAPFELVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDTKWEIVEETRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDRVTEAMMNTISATHKDENGADMETNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRMHDCGTDNAITCEAAVNDGEVVASIGERLLGRV
AADDIIKPGTDEVIVSAGQLIDERMADAVEDAGIQSTRIRSPLTCEAEEGVCAMCYGRDL
ARGTMVNSGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQAGIVHFENAQ
LLDNAAGETMVMGRNMKLLIKDEAGEERASHKIGYGTKIFVTEGQQVSRGDKLFEWDPYT
LPIIAEKAGTAKFVDLVSGIAVRDETDEATGMTQKIVIDWRAAPKGNELKPEIILADENG
EPVRNDAGNPVTYPMSVDAVMSIEDGQTVQAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEVDGYVRFGRDYKNKRRISIEPSDETMETVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILSIMGVEALAEYMIDEVQEVYRLQGVKINDKHIEVIVRQMLQKWE
ILDSGDTTLLKGEHVDKQEFDQANEKALARGQRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQKVRRIASDRDNVVIEARRD
EAQAAAALAAPMEDDIIGGDEFDTLVETPESRD
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaaatcaccaacaacccgttcaatccgctgacgccgcccaaggtctttgac
gagatcaaggtgtcgctggcgtcgcccgaacggatcctgagctggtcctacggcgagatc
aagaagcccgagacgatcaattaccggaccttcaagcccgagcgtgacggcctgttctgc
gcccggatctttggcccgatcaaggattacgagtgcctgtgcggcaagtacaagcgcatg
aagtatcgcggcgtcgtctgcgagaaatgcggcgtggaagtcacgctgcagaaggtgcgc
cgcgagcgcatgggccatatcgaactggcctcgcccgtcgcgcacatctggttcctgaag
tcgctgccgtcccggatcggcctgatgctggacatgaccctgcgcgacctggaacgggtt
ctgtacttcgagaactacgtggtcatcgaaccgggcctcaccgatctcacctacggtcag
atgctgaccgaagaagagttcatggacgcccaggatgcctatggcatggacgccttcacc
gccaatatcggcgctgaagccatccgcgaaatgctggcggcgatcgatctggaagccgaa
gccgagcagctgcgcgccgacctggccgaggccaccggcgagctgaagccgaagaagatc
atcaagcgtctgaaggtcgtggaatccttcctggaatcgggcaaccggccggaatggatg
gtcatgaccgtgatcccggtcatcccgccggaactgcgcccgctggtcccgctggacggc
ggccggttcgcgacgtccgacctcaacgacctgtatcgccgggtgatcaaccggaacaac
cgcctcaagcggctgatcgaactgcgcgcgccggacatcatcgtccggaacgaaaagcgg
atgctgcaggaatcggtcgacgccctgttcgacaacggccgtcggggccgcgtgatcacc
ggcgccaacaagcgtccgctgaaatcgctgtcggacatgctgaagggcaagcagggccgc
ttccgccagaaccttctgggcaagcgggtcgacttctcgggccggtcggtcatcgtgacc
gggccggagctgaagctgcaccagtgcgggttgccgaagaagatggcgctcgaactgttc
aagccgttcatctattcgcgccttgaagccaagggcctcagcagcaccgtgaagcaggcg
aagaagcttgtcgaaaaggaacgcccggaagtctgggacatcctcgacgaggtcattcgc
gaacacccggtcatgctgaaccgggcgccgacgctgcaccgcctcggcatccaggcgttc
gagcccaagctgatcgaaggcaaggcgatccagctgcacccgctggtctgctcggccttc
aacgccgacttcgacggcgaccagatggccgtgcacgtcccgctgagcctcgaggcccag
ctggaagcgcgtgtcctgatgatgtcgacgaacaacgtcctgtcgcccgccaacggtgcg
ccgatcatcgttccgtcgcaggacatgatccttggtctctactacgtgaccgtgatgcgc
gaaggcatgaagggcgaaggcaagatctttggttcgatgaacgaagtcgaacacgcgctg
gatgccggcgaggtgcacctgcacgccaaggtcaccgcgcggatcacccagatcgacgag
gaaggcaacgaggtcgaaaagcgtttcgagacgaccccgggccgggtgaagcttggcgcg
ctgctgccgctgaacgccaaggcaccctttgaactggtcaaccgtcttctgcggaagaag
gaagtccagcaggtcatcgacaccgtctaccgctattgcggccagaaggaatcggtcatc
ttctgcgaccagatcatgaccatgggcttccgcgaggcgttcaaggcggggatctccttc
ggcaaggacgacatggtcatccccgacaccaagtgggaaatcgtcgaagagacccgtgac
caggtcaaggacttcgaacagcagtacatggacggcctgatcacccagggtgagaagtac
aacaaggtcgtcgatgcctggtcgaagtgtaacgaccgcgtcaccgaagcgatgatgaac
acgatctcggccacccacaaggacgagaacggcgccgacatggaaaccaactcggtctac
atgatggcgcactccggtgcccgtggctcggtcacgcagatgaagcagctgggcgggatg
cgcggcctgatggcgaagccgaacggcgacatcatcgaaacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgaatacttcaactcgacccacggcgcccggaagggtctg
tcggatacggctctgaagacggcgaactcgggttacctgacccgtcgtctggtggacgtg
gcgcaggactgcatcgtgcgcatgcacgattgcggcaccgacaacgcgatcacctgcgaa
gcggccgtcaacgacggcgaagtcgtggcgtccatcggcgagcgtctgcttggccgtgtg
gcggccgacgacatcatcaagccgggcacagacgaggtcatcgtctcggccggtcagctg
atcgacgaacgcatggccgacgctgtcgaagatgcgggcatccagtcgacccgcatccgg
tcgccgctgacctgcgaggccgaagagggcgtctgcgccatgtgctacggtcgtgacctg
gcgcgcggtacgatggtcaactccggcgaagcggtcggcatcatcgccgcccagtctatc
ggtgaacccggcacccagctgacgatgcggaccttccacatcggcggtgtcgcgcagggt
ggccagcagtccttcctcgaagccagccaggccggcatcgtgcatttcgagaacgctcag
cttctcgacaatgccgcgggcgagaccatggtgatgggccgtaacatgaagctgctcatc
aaggacgaggccggtgaagagcgggccagccacaagatcggctacggcaccaagatcttc
gtcaccgaaggtcagcaggtgtcgcgcggcgacaagctgttcgaatgggacccgtatacc
ctgccgatcatcgccgagaaggccggtacggccaagttcgtcgaccttgtcagcggcatt
gccgtgcgcgacgagaccgacgaagcgacgggcatgacccagaagatcgtgatcgactgg
cgggccgcgccgaaaggcaacgagctgaagcccgagatcatcctggccgacgagaatggc
gaaccggtccgcaacgacgcgggcaacccggtgacctatccgatgtcggtggatgcggtc
atgtcgatcgaggacggccagaccgttcaggccggcgacgtcgtggcacggatcccgcgg
gaaggtgcgaagaccaaggacatcaccggcggcctgccgcgtgtggccgagcttttcgaa
gcacgtcgtcccaaggatcacgccatcatcgccgaggtcgacggttacgtgcggttcgga
cgcgactacaagaacaagcgtcgtatcagcatcgaaccgtcggacgagacgatggaaacg
gtcgagtacatggtgcccaagggcaagcacatcccggtgcaggaaggcgacttcgtgcag
aagggtgactatatcatggacggcaaccccgcgccccacgacatcctgtcgatcatgggt
gtcgaggctctggccgagtacatgatcgacgaggtgcaggaggtctatcgtctgcagggc
gtgaagatcaacgacaagcacatcgaggtcatcgtgcgccagatgctgcagaagtgggag
atcctggattcgggcgacaccacgctgctgaagggcgaacatgtcgacaagcaggagttc
gatcaggccaacgagaaggccctggcccgtggccagcgccccgcgcaaggcgaaccgatc
ctgctgggcatcaccaaggcgtcgctgcagacccggtcgttcatctcggccgcgtccttc
caggaaaccacccgcgtgctgaccgaggcgtctgtccagggcaagcgcgacaagctggtc
ggcctgaaggaaaacgtcatcgtcggccgcctgatcccggccgggaccggtggggcgacc
cagaaggtgcgtcggatcgcgtccgatcgcgacaacgtggtcatcgaggcccgtcgcgac
gaggcccaggcggccgcggcgctggcagctccgatggaggacgacatcatcggtggcgac
gagttcgacacgctggtggaaaccccggaaagccgcgattga
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integrated database retrieval system
