Mannheimia pernigra ZY170218: GM695_03075
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Entry
GM695_03075 CDS
T06423
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mann
Mannheimia pernigra ZY170218
Pathway
mann03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mann00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GM695_03075 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mann03021
]
GM695_03075 (rpoC)
03400 DNA repair and recombination proteins [BR:
mann03400
]
GM695_03075 (rpoC)
Enzymes [BR:
mann01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GM695_03075 (rpoC)
Transcription machinery [BR:
mann03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GM695_03075 (rpoC)
DNA repair and recombination proteins [BR:
mann03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GM695_03075 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QHB18467
LinkDB
All DBs
Position
610423..614706
Genome browser
AA seq
1427 aa
AA seq
DB search
MKDLVKFLKAQAKSNDDFDVIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELACPVAHIWFLKS
LPSRIGLILDMPLRDIERVLYFESYVVTEPGMTDLEKNQLLTEEQFMEAEERWGDEFEAK
MGAEGIQELLRDLDLEHQCEILREELQETNSETKRKKITKRLKTLEAFLQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLRLHQCGLPKKMALELFRPFIYSKLESRGIASTIKAAKKMVEREEPIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPASGDPIIVPSQDVVLGLYYMTREKVNGKGEGMYFLDPREAEKAYRT
GQAELHSRVKVRVTEYEKNEASEFVAKTALVDTTIGRSILWMIAPKGMPFSLFNQTLGKK
AISKLINESYRRLGLKESVVLADQIMYTGFAYAARSGASVGIDDMVIPEQKYSIIEAAEA
EVAEIQEQFNGGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRV
LGRVVAEDVLKPGTDAVLIPRNTLLDEKWCDVVDRESVDVIKVRSVVTCDTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIK
LTNAKFVTNKDGKIVLTSRNTELTVIDTFGRTKENYKVPYGAVLSKNDGAEVNAGEVVAN
WDPHTMPVISEVSGRIQFSDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALR
LVDSNGKDILIPGTDVAAQYFLPGKAIVTLDDGAEIAVGEALARIPQESVGTKDITGGLP
RVADLFEARKPKDPAILAEISGIVSFGKETKGKRRLVITPAEGEAFEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATITNAYDSEFLDGEQVEVARVKIANCKREAEGKPLVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKQDELRGLKENVIVGRLIPAGTGFAYHQNRAKKRAQLEAGI
AVAPEYEAPAVKENSFVTDSDIEAEFEFVADDATQSLAALLNAGEEE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagtgaagtttttaaaggcacaagcaaaatcaaacgatgatttcgatgtg
attaaaattggtttagcatcaccagataagatccgttcttggtcttttggtgaagtgaaa
aaaccagaaaccattaactaccgcaccttcaaaccagagcgtgacggtttattttgtgca
cgtattttcgggccagtaaaagactacgagtgcctgtgtggtaaatacaaacgtttaaaa
caccgtggtgtaatctgtgaaaaatgtggtgttgaggttactcaaactaaagtacgtcgt
gagcgtatggggcatattgaattagcttgcccagttgcacacatttggttcttaaaatca
ctgccgtcccgtattggtttaattttagatatgccattgcgtgatattgaacgtgtgctt
tactttgaaagctatgtagtaactgagccaggaatgactgatttagaaaaaaatcagcta
ttaaccgaagagcagtttatggaagctgaagagcgttggggtgatgagtttgaagcgaaa
atgggtgcagaaggtattcaggaattgcttcgtgacttagatttagaacaccaatgtgaa
attttgcgtgaagaattacaagaaaccaattcagaaactaaacgtaaaaaaattactaag
cgtttaaaaaccttggaagcattcttacaatcgggtaacaagccagaatggatggtaatg
accgttcttccagtattaccgccagatttacgtccattagtaccgcttgatggtggtcgc
tttgcaacctctgatttaaacgatttataccgccgtgtaattaaccgtaacaaccgttta
aaacgcttgttagacttagttgcaccagacattatcgtacgtaacgaaaaacgtatgtta
caagaatctgtggatgcgttattagacaatggtcgtcgtggtcgtgcaattacgggttct
aacaaacgtccgttaaaatcacttgcggatatgataaaaggtaaacaaggtcgtttccgt
caaaacctattaggtaaacgtgtggattattcaggccgttctgtaatcaccgtaggtcca
tatttacgcttacatcaatgtggtttaccgaagaaaatggcattggagttattccgccca
tttatctactctaaattagaatctcgtggcattgcatcaactattaaagcagcgaagaaa
atggttgagcgtgaagagccgattgtatgggatattcttgcagaagttatccgtgaacat
ccaatcctacttaaccgtgcaccaacgcttcaccgtttaggtatccaagcgtttgagcca
ttattgattgaaggtaaagcgatccaattacatccacttgtttgtgcagcattcaatgcg
gacttcgatggtgaccaaatggcggtacacgttccattaacccttgaagctcagttagaa
gctcgtgcgttaatgatgtctaccaacaatgtgctttcgcctgcaagtggtgatccgatc
atcgttccatctcaagacgttgtacttggtctttactatatgactcgtgagaaagtaaac
ggcaaaggtgaaggaatgtatttccttgacccacgtgaagcggaaaaagcataccgcact
ggtcaagcagaattacactctcgtgtaaaagtgcgtgtgactgaatatgagaaaaatgaa
gcgagcgaatttgttgctaaaactgcattagtggatactaccatcggtcgttccatttta
tggatgatcgcaccaaaaggtatgccatttagcttattcaaccaaacattaggtaaaaaa
gccatctcgaaattaatcaatgagagctaccgccgcttaggtttgaaagagtctgtggtt
ttagctgaccaaattatgtacaccggtttcgcttacgctgcacgttcaggtgcttctgtt
ggtattgatgatatggttattccagaacaaaaatactccatcattgaagcggctgaagca
gaagtagctgaaattcaagaacagttcaacggcggtttagtaacagcgggcgagcgttat
aacaaagtaatcgatatttgggcagcagcaaacgaacgtgttgctaaagcgatgatggaa
aacctttcaacggaagaagtaatcaaccgtgaaggtaacccagaaaaacaagcgtcattt
aacagcatctttatgatggcagactctggtgcgcgtggttctgcggcacagattcgtcag
ttagcgggtatgcgtggcttgatggcacgtccagacggctcaattattgaaaccccaatc
acggcaaacttccgtgagggcttaaacgttttacagtactttatttcaacccacggtgca
cgtaaaggtcttgccgatactgcattaaaaacagcgaactcaggttacttaactcgccgt
ttagtagatgtcgcacaagatttagtgatcatcgaagatgactgtggtacacacgaaggt
atcgtgatgaccccattaattgagggtggtgatgtaaaagaagctctgcgtgatcgtgta
ttaggtcgtgtggtagcggaagatgtgttaaaaccaggtacagatgcagtattaattcca
cgtaataccttattagatgaaaaatggtgtgatgtggtggatcgtgaatctgttgatgtg
atcaaagtacgttcggtagtaacttgtgatacagacttcggtgtgtgtgctaaatgttac
ggacgtgacttggctcgtggtcacttaatcaaccaaggtgaagcggtcggtgttattgcg
gcacaatctatcggtgagccgggtacacagttaacgatgcgtacgttccatatcggtggt
gcggcatctgcggcagcgaaagaatctagcattcaagtgaaaaatgcaggtacgattaag
cttaccaacgcgaaattcgtaactaacaaagacggcaaaatcgtattaacttcacgtaac
acagaattaaccgttatcgacacctttggtcgtaccaaagagaactacaaggtgccttac
ggtgcagtgttatcgaaaaatgatggtgcagaagtaaatgcaggtgaagtagtagcaaac
tgggatccgcatacaatgccagttatctcagaggtatcaggtcgtatccaatttagcgac
atcgtagatggcttaaccgttactcgccaaaccgatgaattaaccggtttatcatctatc
gtggtgcaagatgtgggtgaacgtgcaaccgcaggtaaagatttacgtccggcattacgc
ttagttgatagcaacggcaaagacatcttaattccgggtacagacgttgcagcacaatac
ttcttaccgggtaaagcaatcgtaaccttagatgacggtgcagaaatcgcagtgggtgaa
gcattagctcgtattccacaagaatctgtgggtacgaaagatattactggtggtcttcca
cgtgttgcagacttatttgaagcacgtaaaccgaaagatccagcgatcttggcggaaatt
tcaggtatcgtctcatttggtaaagaaaccaaaggtaaacgccgcttggtaattacccca
gccgaaggcgaagcgtttgaagaaatgattccaaaatggcgtcaattaaacgtattcgaa
ggcgaaatggtacaacgtggtgatgtaatctcggatggtgcagaaactccacacgatatc
ttacgcttacgtggtgtacacgctgtaacagactacatcgtaaacgaagtacaagaagtt
taccgcttacaaggggtaaaaattaacgataaacacattgaagttatcgttcgccaaatg
ttgcgtaaagcaaccattacgaatgcttacgactctgaattcctagacggagaacaagtc
gaagtggctcgtgtgaaaattgctaactgcaaacgcgaagcagaaggtaaaccacttgtt
gaatttgaacgtgaattgcttggtattaccaaagcatctcttgcaacagaaagcttcatt
tctgcggcatcgttccaagaaaccactcgagtgcttaccgaagcagcagtggcaggtaaa
caagatgagttacgcggcttaaaagaaaacgtaattgttggtcgcttaattccggcaggt
accggttttgcttaccaccaaaatcgtgctaaaaaacgtgcccaactggaagcaggcatt
gcagtagctcctgagtacgaggcaccagctgtaaaagaaaactcatttgttactgactca
gacatcgaagctgaatttgaattcgttgccgatgatgcaacccaaagtttagcagcattg
ttaaatgcgggtgaggaagagtaa
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