Mannheimia pernigra ZY170218: GM695_05445
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Entry
GM695_05445 CDS
T06423
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mann
Mannheimia pernigra ZY170218
Pathway
mann03030
DNA replication
mann03430
Mismatch repair
mann03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GM695_05445 (dnaE)
03430 Mismatch repair
GM695_05445 (dnaE)
03440 Homologous recombination
GM695_05445 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mann03032
]
GM695_05445 (dnaE)
03400 DNA repair and recombination proteins [BR:
mann03400
]
GM695_05445 (dnaE)
Enzymes [BR:
mann01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GM695_05445 (dnaE)
DNA replication proteins [BR:
mann03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GM695_05445 (dnaE)
DNA repair and recombination proteins [BR:
mann03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GM695_05445 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
HTH_10
Motif
Other DBs
NCBI-ProteinID:
QHB17514
LinkDB
All DBs
Position
1089807..1093283
Genome browser
AA seq
1158 aa
AA seq
DB search
MSDCRFVHLKVHSDFSMINGLAKVKSLVKTAVANNMVAMGLTDFTNFCGLVKFYGEALGS
GIKPIIGADIYVKSESGGDGYVELTLLAKNNKGYHNITQIISKAYQQGYFEYPMVKYEWL
AEFNEGIIILSGGRMGDVGKALLKENLQEATEKLAFYQQYYPNHFYLSVCRTGRAEEERY
ITQAVKFARKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPKQYFR
SEEEMCKLFADLPSALANTVEIAKRCSVTVRLGEYFLPSFPTGELSTEDFLVKKSKEGLE
ERLAFLFPDSSERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPG
RGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAET
YGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLEKAFAAEPKL
PELYETDEEVKDLIDMARKLEGLTRNAGKHAGGVVIAPTSITDFSPLYCDSEGLHPVTHF
DKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLSREGKEPIRIEMIPLDDKKSFDLLL
AAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGKEEV
SYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMA
AQREVFEKGAESKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE
FMAAVMTSELDNTDKIVGFYDECINMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAIKGV
GEGPIEAILAARNKDGKFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALMKN
LEDALKASDQHAKMEELGQSDMFGVLTETPEEVQNAYANTPKWSEQTILDGERATLGLYL
SGHPIGRFLKELSHYAPSRLNELQPTFRGQMVTVSGMVMASRVAVTKRGSRIGIATIEDR
SGKLDITLFSEALENFGHLMQQDQIIVATGSVQFDDFSGGLKMSAREVLSLDDARSRFAK
SLALAISKEQLSANFLKKMTAIIAPHKEGTLPLHFYYQSPEGRALLKGGVEWRITPNEQM
FSELKDLLGENAVELEFE
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattgtcgtttcgttcatttaaaagtacacagtgatttctctatgattaatggt
ttagcgaaggttaaatcattagttaaaaccgcagtcgccaataatatggtggcaatgggc
ttaaccgattttacaaatttttgtggcttagtaaaattttatggcgaagcattaggctcg
ggcattaaaccaattattggtgctgatatttatgttaaatcagagtcaggtggtgatggc
tatgttgagcttaccttattagccaaaaataacaaaggctatcacaatatcactcaaatc
atttctaaagcttatcagcaaggctattttgaatatccgatggttaaatatgaatggctt
gctgaattcaatgaaggtatcattattctctcgggtgggagaatgggcgatgtgggcaaa
gccttacttaaagaaaacttgcaagaagctacggaaaaacttgccttttatcaacaatat
taccccaatcatttttacttgtctgtttgccgtacggggcgagcggaagaagaacgctac
atcacacaagcggttaaatttgcacgaaaaaatgcaattccattagttgcggttaatgat
gttgtcttcctcaaagaagatgactttgatgctcatgaaattcgtgttgcaattcatgat
agttacactttagacgatccaaaacgtccgaaaaaatattcacctaagcaatattttcgt
tcagaagaggaaatgtgcaagctctttgctgatttacctagtgcgttagcaaatacggta
gaaattgctaagcgttgttcagtgactgtgcgtttaggggaatatttcctgccaagtttt
ccaacgggtgagctttctaccgaagattttttagtgaaaaaatcaaaagaggggttggag
gagcgtttagcatttttattccctgattcctcagagagagctaacaagcggtcagtttat
gacgaaagattgcaagttgaattagatgttatcaatcaaatgggatttcctggttatttc
ttgatcgtaatggagtttattcaatggtcgaaagataatggcattcctgttggtcctggg
cgtggttcgggagcagggtcgttagttgcttatgcgttaaaaattacggatctcgatcca
ttagcatttgacttgcttttcgagcgttttttaaaccctgaacgtgtttcaatgcctgat
tttgacgtggatttctgtatggatgggcgagacagagttattgaacacgtggcggaaacc
tatgggcggcaagcagtatcacaaattattaccttcggtacaatggcagcgaaagcggta
attcgagatgtaggacgtgtgcttgggcatccttatagtttcgtggatcggatttctaaa
ctgatccctcctgatccaggtatgaccttagaaaaggcgtttgctgcggaaccgaaattg
ccagagctatatgaaactgatgaggaagtgaaagatcttattgatatggctcggaaactc
gaaggtttaacgcgtaatgcaggtaaacacgcaggtggagtggtcattgccccgacgtct
attactgatttttcaccactttattgcgatagcgaaggattacaccctgttacccatttt
gataaaaatgacgtggaatatgcagggctggtgaagtttgattttttagggctacgtacg
cttactatcatcaaatgggcgttggaaatgataaatgagcggttatctcgtgagggtaaa
gagccgattcgaattgaaatgattccgcttgatgataaaaaatcctttgatttattgctc
gccgcgaaaacaacggcggtattccagcttgaatcaaggggtatgaaagacttgatctca
cgcttaaaacccgactgttttgaagatattatcgcgctagtcgcattgttccggccaggt
ccgcttgaatcaggtatggtgcagaactttatcgaccgtaaacatggtaaagaagaggtt
tcttacccagatccacaatatcagcacgaatgcttaaaaccaattttagagccgacatac
ggtgttattgtttaccaagagcaagtaatgcagattgcccaagagctggctggttatacg
ctgggtggagcggacttacttcgccgtgcaatgggaaagaaaaagcccgaagagatggcg
gctcaacgtgaagtgtttgaaaaaggggcagaatcaaaagggatagatggaaaacttgca
gggcaaatttttgacttagtagaaaagtttgcaggctatggttttaataaatcgcactca
gcagcgtatgccttggtttcttaccaaacgctttggttaaaagcccattatccagccgaa
tttatggccgctgtgatgacttcagaattggataataccgataaaatcgttggcttttac
gatgaatgtataaatatggggctaaccgttgtaccacctgatgtaaatagcggaaagcac
cgctttagcgtaaatgaaaaaggtgaaattgtatatgggcttggtgcaattaaaggcgtt
ggagaaggtccgattgaggcgattttagctgctcgtaacaaagacggcaaattcaaagat
ttgtttgatttaactgctcgtgtcgatctgaaaaaaattaaccgtcgaacttttgaaagc
ctgattatgtcaggtgcttttgataaacttggtccacatcgtgcggcgttaatgaaaaat
ttagaagatgcgcttaaagcgtccgatcagcacgcgaaaatggaagagttagggcagagc
gatatgttcggtgtgctgactgaaacacccgaagaagtacaaaatgcctatgcaaatacg
ccaaaatggtctgaacagactattttagatggcgaacgtgcaacattagggctctattta
agtgggcatccaattggcagatttttgaaagagttatcgcactatgcccctagtcggtta
aacgagttacaaccgactttcagagggcaaatggtcacggtttctggtatggtaatggca
tcacgggtagcagtaacaaagcgtggtagccgtattggtatcgcaacgattgaagaccgt
tcgggtaagctcgatattacgcttttctctgaagcattggaaaattttgggcatttaatg
caacaagatcaaattattgtcgccacaggttctgtgcagtttgatgattttagtggtggt
ctaaaaatgtcggcaagggaagtgctttctcttgatgacgctcgcagcagatttgcaaaa
agtttggcacttgctattagtaaagagcagctttctgccaattttctcaaaaaaatgact
gctatcattgcgcctcacaaggaaggcacgttaccactgcatttctattaccaaagtcca
gaggggcgtgcgttgctgaaagggggcgtagagtggcgaataacgcctaatgagcagatg
ttttcggaactaaaagatttactgggtgaaaatgcggtggaattagaatttgaataa
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